Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells

ABSTRACT: Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells

PROVIDER: PRJNA971223 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24441300_1.fastq.gz	Fastqsanger.gz
	SRR24441300_2.fastq.gz	Fastqsanger.gz
	SRR24441400_1.fastq.gz	Fastqsanger.gz
	SRR24441400_2.fastq.gz	Fastqsanger.gz
	SRR24441500_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 852

Similar Datasets

Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]

Project description:Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]

| PRJNA967348 | ENA

Novel kethoxal derivatives-assisted identification of single-stranded RNA-binding proteins

Project description:This project introduces the kethoxal-assisted single-stranded RNA interactome capture (KASRIC) strategy to enable transcriptome-wide identification of single-stranded RBPs (ssRBPs). The kethoxal probe selectively modifies unpaired guanine residues in RNA single-stranded regions, thereby blocking ssRBP interaction near these sites. After RNA-protein crosslinking and oligo(dT) bead-mediated capture, enriched proteins are analyzed using DIA proteomics. Proteins with significantly down-regulated abundance in kethoxal-treated groups (N-Block and A-Block) compared to the crosslinked control group (cCL) are identified as candidate ssRBPs.

2025-01-03 | PXD059447 |

Exonuclease-assisted identification of pseudouridine sites in single-stranded RNA

Project description:Exonuclease-assisted identification of pseudouridine sites in single-stranded RNA

| PRJNA954003 | ENA

Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]

Project description:We report a novel chromatin structure analysis technique, named "CHEX-seq" (CHromatin EXposed), which couples oligonucleotide random annealing and nucleus-resolution photoactivation such that the single-stranded open-chromatin DNA is copied, reverse transcribed, amplified and sequenced.

2023-10-19 | GSE231719 | GEO

Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-10-19 | GSE232216 | GEO

Exonuclease-assisted identification of pseudouridine sites in single-stranded RNA

Project description:Pseudouridine is considered as the most abundant modified nucleotides in RNA, playing an indispensable role in various life processes. The identification of pseudouridine sites provides the basis for the study of their function. Here, we proposed a new method for the identification of pseudouridine sites with a higher signal-to-noise ratio, combining CMC-specific labeling of pseudouridine sites and exonuclease-assisted strategy. We called this method exonuclease-assisted identification of pseudouridine sites (EAIPS).

2024-11-06 | GSE229317 | GEO

smRNAs generated by single-stranded and double-stranded silencers

Project description:To investigate possible smRNAs linked to TMM silencing by single-stranded and double-stranded silencers, we determined sequences of smRNAs by the Illumina high-throughput sequencing platform and compared silencing efficiency of different strategies. We found that single-stranded silencer alone could promote the production of smRNAs. smRNA profiles of 2-week-old wide type seedlings (WT) and different silencers were generated by Illumina Genome Analyzer IIx.

2013-12-23 | E-GEOD-39398 | biostudies-arrayexpress

smRNAs generated by single-stranded and double-stranded silencers

2013-12-23 | GSE39398 | GEO

Spatially mapped single-cell chromatin accessibility

Project description:Spatially mapped single-cell chromatin accessibility

| PRJNA692203 | ENA

Spatially mapped single-cell chromatin accessibility

Project description:sciMAP-ATAC as a technology to produce single-cell ATAC-seq data with cells mapped to spatially-defined regions.

2021-01-15 | GSE164849 | GEO