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Non-pathogenic leaf-colonising bacteria elicit plant immune responses in a colonisation density-dependent manner

ABSTRACT: Non-pathogenic leaf-colonising bacteria elicit plant immune responses in a colonisation density-dependent manner

PROVIDER: PRJNA971489 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR24502571_1.fastq.gz	Fastqsanger.gz
	SRR24502571_2.fastq.gz	Fastqsanger.gz
	SRR24502572_1.fastq.gz	Fastqsanger.gz
	SRR24502572_2.fastq.gz	Fastqsanger.gz
	SRR24502573_1.fastq.gz	Fastqsanger.gz

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Non-pathogenic leaf-colonising bacteria elicit pathogen-like responses in a colonisation density-dependent manner

Project description:Non-pathogenic leaf-colonising bacteria elicit pathogen-like responses in a colonisation density-dependent manner

| PRJNA971483 | ENA

Non-pathogenic leaf-colonising bacteria elicit pathogen-like responses in a colonisation density-dependent manner

Project description:Leaves are colonised by a complex mix of microbes, termed the leaf microbiota. Even though the leaf microbiota is increasingly recognised as an integral part of plant life and health, our understanding of its interactions with the plant host is still limited. Here, mature, axenically grown Arabidopsis thaliana plants were spray-inoculated with diverse leaf-colonising bacteria. Whole transcriptome sequencing revealed that four days after inoculation, leaf transcriptional changes to colonisation by non-pathogenic and pathogenic bacteria differed in strength but not in the type of response. Inoculation of plants with different densities of the non-pathogenic bacterium Williamsia sp. Leaf354 showed that high bacterial titers caused disease phenotypes and led to severe transcriptional reprogramming with a strong focus on plant defence. This SuperSeries is composed of the SubSeries listed below.

2023-05-17 | GSE232254 | GEO

Non-pathogenic and pathogenic leaf-colonising bacteria elicit qualitatively similar responses

2023-05-19 | GSE232251 | GEO

Non-pathogenic leaf-colonising bacteria elicit plant immune responses in a colonisation density-dependent manner

2023-05-19 | GSE232248 | GEO

Non-pathogenic and pathogenic leaf-colonising bacteria elicit qualitatively similar responses

Project description:Non-pathogenic and pathogenic leaf-colonising bacteria elicit qualitatively similar responses

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Barley root gene expression during colonisation by Piriformospora indica

2009-04-29 | GSE13756 | GEO

Barley root gene expression during colonisation by Piriformospora indica

Project description:The fungal mutualist Piriformospora indica is colonising barley roots thereby mediating various beneficial effects to its host. The interaction is characterised by an initial biotrophic interaction stage which is followed by a cell death-dependent colonisation phase. We used microarrays to identify the global programme of gene expression during the colonisation process of barley roots by P. indica and to obtain informations into plant defense and metabolic reprogramming. In three independent experiments plants were inoculated with Piriformospora indica. Samples from inoculated roots were taken at 1, 3, and 7 days after inoculation. Samples from uninfected control plants were taken at the same time points.

2010-05-19 | E-GEOD-13756 | biostudies-arrayexpress

Neisseria lactamica Colonisation

Project description:Neisseria lactamica Colonisation

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A Closer Look at Plastic Colonisation

Project description:The aim of this study was to investigate the plastic colonisation process, to identify the active taxa involved in biofilm formation and the mechanisms used to initiate colonisation. To achieve this, a marine plastisphere characterised by active hydrocarbonoclastic genera was used as the inoculum for a short-term microcosm experiment using virgin low-density polyethylene as the sole carbon source. Following incubation for 1 and 2 weeks (representing early and late colonisation, respectively), a taxonomic and comparative metaproteomic approach was used to explore shifts in diversity and function.

2024-06-14 | MSV000095034 | MassIVE

Colonisation of Probiotic in Neoplasia.

Project description:Interventions: The probiotic is Escherichia coli Nissle 1917 (EcN), supplied as Mutaflor, Ardeypharm. Each tablet contains at least 5x108 colony forming units (CFU) EcN. Participants will take either 2 tablets of probiotic or placebo (sugar pill) per day for 14 to 28 days, prior to surgery or colonoscopy. Previous studies have administered probiotic for 28 days. This has been shown to be a safe human dose in earlier phase I trials that unfortunately did not measure colonisation as an end-point. The duration of intervention will depend upon the time participants are consented before their procedure (at least 14 days). Adherence of the intervention will be monitored by probiotic tablet return. Mutaflor and placebo tablets are provided for free from Ardeypharm. Primary outcome(s): Neoplastic colonisation as assessed by DNA sequencing of surplus pathology tissue.[5 years post-enrolment.] Study Design: Purpose: Treatment; Allocation: Randomised controlled trial; Masking: Blinded (masking used);Assignment: Parallel;Type of endpoint: Bio-availability

| 2468660 | ecrin-mdr-crc

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