Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Construction of earthworm chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

ABSTRACT: Construction of earthworm chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

PROVIDER: PRJNA971516 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24507500_1.fastq.gz	Fastqsanger.gz
	SRR24507500_2.fastq.gz	Fastqsanger.gz
	SRR24507600_1.fastq.gz	Fastqsanger.gz
	SRR24507600_2.fastq.gz	Fastqsanger.gz
	SRR24507501_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 384

Similar Datasets

Construction of zebrafish chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

Project description:Construction of zebrafish chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

| PRJNA970700 | ENA

Construction of Drosophila chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

Project description:Construction of Drosophila chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

| PRJNA971517 | ENA

Construction of a cross-species chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

Project description:Construction of a cross-species chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

| PRJNA971144 | ENA

Construction of earthworm chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

Project description:The assay for transposase-accessible chromatin using sequencing (ATAC-seq) at single-cell level can provide different perspectives of regulatory patterns based on cell type-specific accessible regions. While human genomic elements have been well studied, understanding how nuclear acid sequence regulates the expression of target genes in a genome-wide level in other organisms remains a major challenge. Batch effects, expensive machines are still constraints nowadays to build a cross-species landscape for further analysis, a platform with high throughput and low cost will be extremely required.Here, we constructed a cross-species accessible chromatin landscape by combinatorial-hybridization-based single-cell ATAC-seq, a single-cell ATAC-seq platform with high throughput and signal-noise ratio using fresh nuclei as input.

2024-01-15 | GSE232272 | GEO

Construction the adult earthworm cell atlas at single cell resolution.

Project description:Single-cell mRNA sequencing (scRNA-seq) technologies are reshaping the current cell-type classification system. In previous studies, we built the mouse cell atlas (MCA) and human cell landscape (HCL) to catalog all cell types by collecting scRNA-seq data. However, systematically study for zebrafish (Danio rerio), fruit fly (Drosophila melanogaster) and earthworm (Eisenia andrei) are still lacking. Here, we construct the zebrafish, Drosophila and earthworm cell atlas with Microwell-seq protocols, which provides valuable resources for characterization of diverse cell populations of zebrafish, Drosophila and earthworm, and studying difference between vertebrates and Invertebrates at single cell level.

2022-07-08 | GSE181511 | GEO

Earthworm chromatin accessibility atlas with 10x Genomics

Project description:Earthworm chromatin accessibility atlas with 10x Genomics

| PRJNA964592 | ENA

Construction the adult earthworm cell atlas at single cell resolution.

Project description:Construction the adult earthworm cell atlas at single cell resolution.

| PRJNA752294 | ENA

Construction of zebrafish chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

2024-01-15 | GSE232043 | GEO

Construction of Drosophila chromatin accessibility landscape at a single-cell level using CH-ATAC-seq

2024-01-15 | GSE232271 | GEO