Project description:In this study transcriptomic data of three life history stages of Orciraptor agilis was generated: 1) Gliding cells in absence of food ('gliding'), 2) Cells attached to the cell wall of its algal prey during perforation ('fattacking'), 3) Cells after acquisition of the algal plastid material ('digesting'). Furthermore, RNA-seq of the algal prey Mougeotia sp. was also performed. A de novo transcriptome assembly of the algal reads was performed in order to identify and substract algal reads of the Orciraptor samples by mapping the Orciraptor reads to the algal transcriptome. After this filtering step the remaining Orciraptor reads from all libraries were pooled for a de novo transcriptome assembly of Orciraptor agilis. This transcriptome was the basis for a comparative transcriptomic study in which transcript expression was compared between the three life history stages.

2022-06-13 | E-MTAB-11291 | biostudies-arrayexpress

RNAsequencing of Ligilactobacillus agilis grown on Inulin and Lactose

Project description:RNAsequening revolutionized the bacterial gene expression analysis. The objective of this study was to identify the genes involved in metabolism of Inulin in Ligilactobacillus agilis. We have obtained a list of genes upregulated in Ligilactobacillus agilis when it is grown in 1% Inulin

2020-10-27 | GSE160177 | GEO

Ligilactobacillus agilis strain:YZ054

Project description:Ligilactobacillus agilis strain:YZ054 Genome sequencing and assembly

| PRJNA667793 | ENA

Paenibacillus agilis strain:N4

Project description:Paenibacillus agilis strain:N4 Genome sequencing and assembly

| PRJNA556540 | ENA

Ligilactobacillus agilis strain:C7

Project description:Ligilactobacillus agilis strain:C7 Genome sequencing and assembly

| PRJNA837731 | ENA

Ligilactobacillus agilis strain:268A

Project description:Ligilactobacillus agilis strain:268A Genome sequencing and assembly

| PRJNA423148 | ENA

Ligilactobacillus agilis strain:273

Project description:Ligilactobacillus agilis strain:273 Genome sequencing and assembly

| PRJNA423155 | ENA

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