Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Transcriptome of rice microspore with cold treatment

PROVIDER: PRJNA981281 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24872941_1.fastq.gz	Fastqsanger.gz
	SRR24872941_2.fastq.gz	Fastqsanger.gz
	SRR24872942_1.fastq.gz	Fastqsanger.gz
	SRR24872942_2.fastq.gz	Fastqsanger.gz
	SRR24872943_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:The transcriptome of anthers of rice gamyb mutant expressing various GAMYB homologs was measured at the microspore stage.

| PRJNA146963 | ENA

Oryza sativa Raw sequence reads

Project description:Using the HiSeqTM 2000 sequencing platform, the anther transcriptome of photo thermo sensitive genic male sterile lines (PTGMS) rice Y58S and P64S (Peiâai 64S) were analyzed at the fertility sensitive stage under cold stress.These datas would be most beneficial for further studies investigating the molecular mechanisms of rice responses to cold stress.

2015-04-22 | E-MTAB-4312 | biostudies-arrayexpress

Oryza sativa japonica Transcriptome or Gene expression

Project description:In this study, we examined the transcriptome dynamics within the matured fully expanded rice leaf and used strand-specific RNA sequencing to generate a comprehensive transcriptome dataset for the mature rice leaf. The rice Nipponbare (Oryza sativa l. japonica) seedlings were grown in the greenhouse. About 20 days after planting, the fully opened 4th leaves was cut it into seven 3-cm segments, from bottom to tip and labeled as sections 1 to 7, respectively. The tissues were immediately frozen in liquid nitrogen for total RNA extraction. Two biological replicates were collected for each section. Note: All samples in SRA were assigned the same sample accession (SRS685294). This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2015-08-16 | E-MTAB-4372 | biostudies-arrayexpress

Oryza sativa cultivar:japonica Transcriptome or Gene expression

Project description:Comparative transcriptome analysis among closely related rice strains

2014-10-27 | E-MTAB-4280 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:rice transcriptome project

| PRJDB1490 | ENA

Oryza sativa Japonica Group

Project description:Transcriptome profiling of rice G-alpha mutant and WT in response to nitrate treatment

| PRJNA263333 | ENA

Oryza sativa Japonica Group

Project description:Transcriptome analysis of rice stripe virus-infected rice

| PRJNA112679 | ENA

Rice plants (Oryza sativa var. japonica): WT vs. MIT knockdown plant

Project description:Transcriptional profiling of MIT knockdown plants. MIT is a mitochondrial Fe transporter essential for rice growth and development. The goal was to determine the effects of MIT on global rice gene expression.

2011-04-07 | GSE28428 | GEO

Oryza sativa Japonica Group

Project description:Transcriptome study of rice early response to rice blast fungus

| PRJNA178235 | ENA