Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dairy cows

ABSTRACT: Dairy cows uterine microbiome - Raw sequence reads

PROVIDER: PRJNA983811 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24920400.fastq.gz	Fastqsanger.gz
	SRR24920500.fastq.gz	Fastqsanger.gz
	SRR24920600.fastq.gz	Fastqsanger.gz
	SRR24920401.fastq.gz	Fastqsanger.gz
	SRR24920501.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 250

Similar Datasets

dairy cows

Project description:Dairy cows raw sequence reads

| PRJNA900619 | ENA

Vaginal and uterine microbiome of postpartum dairy cows

Project description:Vaginal and uterine microbiome of postpartum dairy cows

| PRJEB43770 | ENA

Ruminal microbiota in dairy cows

Project description:Ruminal microbiota in dairy cows Raw sequence reads

| PRJNA448678 | ENA

Dairy cows - dual-flow continuous culture

Project description:Dairy cows - dual-flow continuous culture Raw sequence reads

| PRJNA943156 | ENA

Faecal samples from lactating dairy cows

Project description:Faecal samples from lactating dairy cows Raw sequence reads

| PRJNA449795 | ENA

Proteome dataset of liver from dairy cows experiencing negative or positive energy balance at early lactation

Project description:This article contains raw and processed data related to research published by Swartz et al. [1]. Proteomics data from liver of postpartum dairy cows were obtained by liquid chromatography-mass spectrometry following protein extraction. Differential abundance between liver of cows experiencing either negative energy balance (NEB, n=6) or positive energy balance (PEB, n=4) at 17±3 DIM was quantified using MS1 intensity based label-free. There is a paucity of studies examining the associations of NEB with the liver proteome in early lactation dairy cows. Therefore, our objective was to characterize the differences in the liver proteome in periparturient dairy cows experiencing naturally occurring NEB compared to cows in PEB. In this study, multiparous Holstein dairy cows were milked either 2 or 3 times daily for the first 30 days in milk (DIM) to alter energy balance, and were classified retrospectively as NEB (n=18) or PEB (n=22). Liver biopsies were collected from 10 cows (n=5 from each milking frequency), that were retrospectively classified according to their energy balance (NEB, n=6; PEB, n=4). The liver proteome was characterized using label-free quantitative shotgun proteomics. This novel dataset contains 2,741 proteins were identified, and 68 of those were differentially abundant between NEB and PEB (P≤0.05 and FC±1.5); these findings are discussed in our recent research article [1]. The present dataset of liver proteome can be used as either biological markers for disease or therapeutic targets to improve metabolic adaptations to lactation in postpartum dairy cattle.

2021-10-13 | PXD028124 | Pride

Ruminal fluid and feces of dairy cows

Project description:Ruminal fluid and feces of dairy cows Raw sequence reads

| PRJNA464424 | ENA

bovine gut metagenome breed:Holstein dairy cows

Project description:bovine gut metagenome breed:Holstein dairy cows Raw sequence reads

| PRJNA325461 | ENA

Transcriptomic Regulations of Heat Stress Response in the liver of Lactating Dairy Cows

Project description:Heat stress (HS) has become a major challenge in the dairy industry around the world. Although numerous measures have been taken to alleviate the HS impact on milk production, the cellular level response to HS remains unclear in dairy cows. The objective of this study was to dissect functional alterations based on transcriptomic dynamics in the liver of cows under HS. Dairy cows exposed to HS exhibited both decreased feed intake and milk yield. Through liver transcriptomic analysis, differentially expressed genes were identified among three experimental conditions, including heat stress (HS), pair-fed (PF), and thermoneutral (TN) groups. We observed the upregulation of protein folding and inflammation-related genes in the HS group, while the mitochondrial genes were downregulated. Gene functional enrichment also revealed that mitochondria function and oxidative phosphorylation were dysregulated under HS. The liver transcriptome analysis generated a comprehensive gene expression regulation network upon HS in lactating dairy cows. Overall, this study provides novel insights into molecular and metabolic changes of cows conditioned under HS. Our results could facilitate the development of efficient biomarkers to mitigate the negative effect of HS on dairy cow health and productivity.

2023-08-08 | GSE226351 | GEO

Ruminal fluid and feces of dairy cows

Project description:Raw sequence reads of Ruminal fluid and feces of dairy cows

| PRJNA464386 | ENA