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Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity

ABSTRACT: Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity

PROVIDER: PRJNA991427 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR25133240_1.fastq.gz	Fastqsanger.gz
	SRR25133240_2.fastq.gz	Fastqsanger.gz
	SRR25133241_1.fastq.gz	Fastqsanger.gz
	SRR25133241_2.fastq.gz	Fastqsanger.gz
	SRR25133242_1.fastq.gz	Fastqsanger.gz

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Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity

Project description:The goal of this study is to demonstrate the global expression profile of Arabidopsis Col-0 wild type plant leaves in response to low, moderate and high humidity.

2023-10-17 | GSE236463 | GEO

Genome-wide expression analysis of Arabidopsis Col-0 plants under BTH treatment and high or low humidity

Project description:The goal of this study is to demonstrate the global expression profile of four-week-old Arabidopsis Col-0 wild type plant leaves in response to high or low air humidity, under water or BTH (SA analog) treatment.

2023-10-17 | GSE210893 | GEO

Genome-wide expression analysis of Arabidopsis Col-0 plant and clf mutant plant under high humidity [RNA-seq]

Project description:Purpose: The goal of this study is to demonstrate the global expression profile of Arabidopsis wild type and clf mutant plants in response to high air humidity Methods: Four-week-old Arabidopsis plant leaves were treated with ~95% relative humidity for 0.5 hour (0h as control) Results and Conclusions: This study showed that many genes including ABA-responsive genes and stomotal movement-related genes were differentially expressed in the clf mutant plant.

2024-09-06 | GSE183558 | GEO

Transcriptome profiling of ozone responses of Arabidopsis thaliana natural accessions Col-0 and Cvi-0, and a near-isogenig line Col-S with Cvi-0's ozone sensitivity introgressed into Col-0

Project description:Many Arabidopsis thaliana accession show sensitvity to the air pollutant ozone, including the accession Cvi-0 from the Cape Verde Islands. To understand and assist in genetic mapping of loci causing the ozone sensitvity of Cvi-0, transcript profiling was performed in Cvi-0, the tolerant Col-0, and a near isogenic line (Col-S) where ozone sensitivity was introgressesed from Cvi-0 to Col-0 through eight rounds of backcrossing.

2017-08-09 | GSE102363 | GEO

'Microarray analysis of abiotic stress responses in three-week-old Arabidopsis thaliana plants'' rosette leaf tissue for Col-0 wild type plants and double/triple knockout mutants of aquaporins (pip2;1 pip2;2 and pip2;1 pip2;2 pip2;4) treated with drought, heat at different air humidities, or combined drought-heat stress at different air humidities'

Project description:This experiment contains microarray measurements for 135 Arabidopsis thaliana rosette leaf samples covering three genotypes under six different environmental conditions. The three genotypes comprise the Col-0 wildtype and two loss-of-function mutants of aquaporins, a pip2;1 pip2;2 double mutant and a pip2;1 pip2;2 pip2;4 triple mutant (respective AGI locus identifiers: AT3G53420, AT2G37170, AT5G60660). The six conditions include control condition (well-watered, 22Â°C, 70% relative air humidity), drought stress (one week without watering), heat stress without changing the absolute humidity of the ambient air (6 hours at 33Â°C, 37% relative air humidity), heat stress with supplemented air humidity to maintain a constant vapor pressure deficit before and during the heat episode (6 hours at 33Â°C, 84% relative air humidity), and the combinations of drought pretreatment with each of the two heat stress variants (one week of drought followed by 6 hours of heat stress). Samples from all conditions were harvested at the same time (within 15 min starting at 5 p.m.).

2017-06-20 | E-MTAB-4867 | biostudies-arrayexpress

Submergence-responsive genes in Col-0

Project description:Col-0 seedlings were submerged or left in air for 1 h and then RNA-sequencing was performed.

2021-08-27 | GSE182724 | GEO

Microarray analysis for leaves of Arabidopsis thaliana Col-0 plants fumigated with nitrogen dioxide (treatment) or air (control)

Project description:Four-week-old Arabidopsis thaliana (Col-0) plants were fumigated for 1 h with 10 parts per million (ppm) nitrogen dioxide (NO2) to analyse leaf transcriptome changes induced by this air pollutant relative to air-fumigated control plants.

2018-08-10 | E-MTAB-6522 | biostudies-arrayexpress

Genome-wide expression analysis of Arabidopsis Col-0 plants under BTH treatment and high or low humidity

Project description:Genome-wide expression analysis of Arabidopsis Col-0 plants under BTH treatment and high or low humidity

| PRJNA868197 | ENA

Total RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0 in Arabidopsis [msh1_graft_leaf_RNA-seq]

Project description:Col-0 floral stem was grafted on the msh1 mutant (Col-0/msh1); on the dcl2,3,4,msh1 quadruple mutant (Col-0/dcl2,3,4,msh1); on Col-0 (Col-0/Col-0). Seeds were collected from the grafted Col-0 scion after grafts were established. Seed coming from the graft then were grown on the peat mix, leaf tissue was collected at the bolting and used for the total RNA sequencing.

2020-09-20 | GSE152565 | GEO

Genome-wide histone 3 lysine 27 trimethylation patterns in wild type and CLF-deficient Arabidopsis plants after high humidity treatment [ChIP-seq]

Project description:We report the H3K27 trimethylation profiles in Arabidospsis wild type and clf mutant plants before and after high humidity treatment. We find that many genes display a different H3-lysine 27 trimethylation level in the clf mutant plant compared to Col-0 plant. In addition, high humidity also influences H3K27 trimethylation profiles in both genotypes.

2024-09-06 | GSE183557 | GEO

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