Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: Regulatory Mechanisms of the LBD40 Transcription Factor in Arabidopsis Somatic Embryogenesis

PROVIDER: PRJNA994122 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25265000_1.fastq.gz	Fastqsanger.gz
	SRR25265000_2.fastq.gz	Fastqsanger.gz
	SRR25265001.fastq.gz	Fastqsanger.gz
	SRR25265002.fastq.gz	Fastqsanger.gz
	SRR25265003.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Arabidopsis thaliana

Project description:Transcription factor transcriptome during somatic embryogenesis (SE) in Arabidopsis thaliana

| PRJNA195892 | ENA

Arabidopsis thaliana strain:Columbia

Project description:Arabidopsis thaliana somatic embryogenesis

| PRJNA422138 | ENA

Arabidopsis thaliana

Project description:MicroRNA expression during somatic embryogenesis in Arabidopsis

| PRJNA152101 | ENA

Arabidopsis thaliana

Project description:embryogenesis ws-somatic embryogenesis

| PRJNA143431 | ENA

Arabidopsis thaliana

Project description:embryogenesis col0-somatic embryogenesis

| PRJNA143393 | ENA

Arabidopsis thaliana

Project description:Expression data from tissues during somatic embryogenesis in Arabidopsis

| PRJNA212312 | ENA

Arabidopsis thaliana

Project description:Transcriptome analysis of somatic embryogenesis initiated from the Arabidopsis shoot apex

| PRJDB6573 | ENA

Arabidopsis thaliana

Project description:The study of transcription factor regulatory networks of aliphatic glucosinolates pathway in Arabidopsis

| PRJNA1058819 | ENA

The embryonic transcriptome of Arabidopsis thaliana

Project description:Cellular differentiation is associated with changes in transcript populations. Accurate quantification of transcriptomes during development can thus provide global insights into differentiation processes including the fundamental specification and differentiation events operating during plant embryogenesis. However, multiple technical challenges have limited the ability to obtain high quality early embryonic transcriptomes, namely the low amount of RNA obtainable and contamination from surrounding endosperm and seed-coat tissues. We compared the performance of three low-input mRNA sequencing (mRNA-seq) library preparation kits on 0.1 to 5 nanograms (ng) of total RNA isolated from Arabidopsis thaliana (Arabidopsis) embryos and identified a low-cost method with superior performance. This mRNA-seq method was then used to profile the transcriptomes of Arabidopsis embryos across eight developmental stages. By comprehensively comparing embryonic and post-embryonic transcriptomes, we found that embryonic transcriptomes do not resemble any other plant tissue we analyzed. Moreover, transcriptome clustering analyses revealed the presence of four distinct phases of embryogenesis which are enriched in specific biological processes. We also compared zygotic embryo transcriptomes with publicly available somatic embryo transcriptomes. Strikingly, we found little resemblance between zygotic embryos and somatic embryos derived from late-staged zygotic embryos suggesting that somatic and zygotic embryo transcriptomes are distinct from each other. In addition to the biological insights gained from our systematic characterization of the Arabidopsis embryonic transcriptome, we provide a data-rich resource for the community to explore.

2018-12-21 | GSE121236 | GEO

Arabidopsis thaliana

Project description:ChIP-seq of Arabidopsis transcription factor CAMTA3

| PRJDB10809 | ENA