Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Characterization and Comparative Analysis of Complete Chloroplast Genomes of Five Species From the Genus Manglietia (Magnoliaceae)

PROVIDER: PRJNA994587 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25266517_1.fastq.gz	Fastqsanger.gz
	SRR25266517_2.fastq.gz	Fastqsanger.gz
	SRR25266518_1.fastq.gz	Fastqsanger.gz
	SRR25266518_2.fastq.gz	Fastqsanger.gz
	SRR25266519_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Magnolia, Michelia, Yulania and other geneus of Magnoliaceae

Project description:Complete chloroplast genome sequencing of multiple species of Magnoliaceae

| PRJNA682272 | ENA

Project description:Comparative analysis of five complete chloroplast genomes of Tulipa L. (Liliaceae)

| PRJNA1103414 | ENA

Project description:Complete chloroplast genomes and comparative analysis of Ligustrum species

| PRJNA880723 | ENA

Project description:Complete chloroplast genome of Manglietia patungensis

| PRJNA994980 | ENA

Project description:Investigation of chloroplast genomes in Magnoliaceae

| PRJNA666275 | ENA

Project description:Characterization of Complete Mitochondrial Genomes of the Five Peltigera and Comparative Analysis with Relative Species

| PRJNA1012278 | ENA

Project description:The complete chloroplast genome of Manglietia calcarea

| PRJNA994874 | ENA

Project description:complete mitochodrion genomes of five cyperaceae species

| PRJNA953783 | ENA

Project description:Assembling the complete genomes of five Salmonella species

| PRJNA847545 | ENA

RNA-Seq Based Reconstruction of the Phylogenetic Tree of the Genus Flaveria (Asteraceae)

Project description:The genus Flaveria has been extensively used as a model to study the evolution of C4 photosynthesis as it contains both C3 and C4 species as well as a number of species that exhibit intermediate types of photosynthesis. The current phylogenetic tree of the Flaveria genus contains 21 of the 23 known Flaveria species and has been constructed using a combination of morphologicial data and three non-coding DNA sequences (nuclear encoded ETS, ITS and chloroplast encoded trnl-F). However, recent studies have suggested that phylogenetic trees inferred using a small number of molecular sequences may often be incorrect. Moreover, studies in other genera have often shown substantial differences between trees inferred using morphological data and those using molecular sequence. To provide new insight into the phylogeny of the genus Flaveria we utilize RNA-Seq data to construct a multi-gene concatenated phylogenetic tree of 17 Flaveria species. Furthermore, we use this new data to identify 14 C4 specific non-synonymous mutation sites, 12 of which (86%) can be independently verified by public sequence data. We propose that the data collection method provided in this study can be used as a generic method for facilitating phylogenetic tree reconstruction in the absence of reference genomes for the target species. 18 Flaveria sample including 11 species are sequenced, other three samples were also sequenced as out-group. In all, 21 samples.

2015-01-08 | E-GEOD-54339 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data