Similar Datasets
Project description:RNA-seq sequencing of the transgenic plants leaves at the six-leaf stage
2020-04-03 | E-GEOD-108627 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of Arabidopsis leaf samples infiltrated with S-nitrosocysteine (CysNO)
2017-02-16 | E-GEOD-81361 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of tomato root, leaf, flower (2 stages) and fruit (6 stages).
2016-09-23 | E-MTAB-4812 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of leaves of inbred line B73 infested with corn leaf aphids
2019-05-14 | E-MTAB-5063 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of leaf slices from soybean recombinant inbred lines treated with MAMP solution
2019-05-14 | E-GEOD-43463 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of Sorghum flag leaf tissue and emerging panicle tissue at panicle emergence
2020-06-22 | E-MTAB-4203 | ExpressionAtlas
Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of gene expression profiles of a chlorosis mutant of Pakchoi. The goals of this study are to transcriptome analysis of a chlorosis. Methods: mRNA profiles of the aboveground parts of WT and a chlorosis mutant were generated by deep sequencing, in triplicate, using Illumina Hiseq platform. The reference genome and gene model annotation files were downloaded from the genome website （http://brassicadb.org/brad/index.php, v1.5）. An index of the reference genome was built using Bowtie v.2.2.3 and paired-end clean reads were aligned to the reference genome using TopHat v.2.0.12. qRT–PCR validation was performed using SYBR Green assays. Results: Based on the threshold values of absolute value of log2 ratio ≥ 1 and FDR ≤ 0.05, a total of 2958 DEGs was identified. Among 2958 DEGs, 9 DEGs related to chlorophyll synthesis and chlorophyll metabolism were identified. The DEGs identified by RNA sequencing were confirmed by qRT-PCR analysis, indicating that the data were reliable. These findings provide information that can be useful for investigating the molecular mechanisms of leaf color mutant. Conclusions: The results presented here reveal changes in the transcriptome profile of a chlorosis mutant. DEGs related to chlorophyll biosynthesis were detected.. These findings provide information that can be useful for investigating the molecular mechanisms underlying the response to chilling stress in cucumber and other plants.
2019-03-23 | GSE112255 | GEO
Project description:Transcription profiling by high throughput sequencing of bundle sheath and leaf mesophyl from successive developmental stages of maize Mo17 inbred line
2019-03-28 | E-GEOD-54272 | ExpressionAtlas
Project description:Transcription profiling by high throughput sequencing of five different organs of wheat (leaf, shoot, root, spike, and grain) at three developmental stages each
2019-01-09 | E-MTAB-4484 | ExpressionAtlas