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Proteomics: Robust and reproducible large-scale label-free deep quantitative profiling of the MOLM-14 surfaceome using three mass spectrometry platforms over multiple years
Surface proteins are one of the most important and common matrices for clinical chemistry and proteomic analyses. With the rapid developments in mass spectrometry (MS)-based proteomics methods, label-free quantitative proteomics has become an increasingly popular tool for profiling global protein abun...
ORGANISM(S): Homo Sapiens (human) 
2021-12-30 | PXD022721 | Pride
Quantitative proteomics Reproducibility Large-scale Surfaceome Mass spectrometry Label-free quantification 
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GenomicsAcquired Copy Number Alterations in Adult Acute Myeloid Leukemia Genomes

We performed genome-wide copy number analysis with paired normal and tumor DNA obtained from 86 adult patients with de novo AML using the Affymetrix Genome-Wide Human SNP array 6.0 containing 1.85 million features. Acquired copy number alterations (CNA) were confirmed using an independent, highe...

phs000201.v1.p1 | EGA
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GenomicsWhole-Genome Sequencing of Acute Myeloid Leukemia

We used massively parallel sequencing technology to sequence the genomic DNA of tumor cells (leukemic bone marrow) and normal cells (skin biopsy) obtained from patients with Acute Myeloid Leukemia (AML). Patients had either de novo AML (AML with no prior diagnosis of a hematologic disease or exposu...

phs000159.v4.p2 | EGA
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UnknownAn integrated map of genetic variation from 1,092 human genomes.
Not available
S-EPMC3498066 | biostudies-literature
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UnknownDNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.
Not available
S-EPMC2603574 | biostudies-literature
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TranscriptomicsRegulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids
Heterosis (hybrid vigor) refers to the superior performance of hybrid progeny relative to their parents. Although widely exploited in agriculture, the mechanisms responsible for heterosis are not well understood. As a monoecious organism, a given maize plant can be used as both male and female paren...
ORGANISM(S): Zea mays 
2009-11-20 | E-GEOD-16136 | biostudies-arrayexpress
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TranscriptomicsThe maize leaf transcriptome
We have generated over 80 million 32 nt reads generated from RNA samples isolated from the tip and base of a developing Mo17 leaf. A comparision of these data with the maize AGP resulted in the confirmation of approximately 88% of the maize filtered gene set Keywords: Transcriptome analysis Examina...
ORGANISM(S): Zea mays 
2009-08-15 | E-GEOD-16916 | biostudies-arrayexpress
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UnknownThe genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
Not available
S-EPMC261899 | biostudies-literature
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UnknownLineage-specific biology revealed by a finished genome assembly of the mouse.
Not available
S-EPMC2680341 | biostudies-literature
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UnknownA catalog of reference genomes from the human microbiome.
Not available
S-EPMC2940224 | biostudies-literature
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