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ProteomicsSWATH mass spectrometry performance using extended ion assay libraries
...or repository-based assay libraries affect SWATH performance for proteomic studies. To undertake this analysis we developed a software workflow, SwathXtend, which generates extended peptide assay libraries using a local seed library and delivers statistical analysis of SWATH-based sample comparisons....
ORGANISM(S): Homo Sapiens (human) Saccharomyces Cerevisiae (baker's Yeast) 
2016-05-12 | PXD002836 | Pride
Swath Dia Extended library 
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ProteomicsThe dataset to discover ESCC related proteins
...for SWATH acquisition with three replicates.Three DDA repeats were also acquired with the pooled 10-paired ESCC tissue.The trypsin digested peptide mixture was analyzed by AB SCIEX 5600 (AB SCIEX).The database searching procedure was achieved using ProteinPilot v4.5 (AB Sciex). The database is IPI_ho...
ORGANISM(S): Homo Sapiens (human) 
2015-09-22 | PXD001764 | Pride
Dda Tissue Swath Escc 
0
ProteomicsHuman bladder cancer LC MS/MS - A Comprehensive Investigation toward the Indicative Proteins of Bladder Cancer in Urine: From Surveying Cell Secretomes to Verifying Urine Proteins
Urine is an ideal material to study and examine the bladder cancer (BCa) biomarkers, whereas exploration to the corresponding protein candidates is confronting technique challenges. Herein, we proposed a comprehensive strategy of searching the urine proteins related to BCa. The strategy consists of t...
ORGANISM(S): Homo Sapiens (human) 
2016-06-17 | PXD003557 | Pride
Human Lc ms/ms Bladder cancer 
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ProteomicsPathophysiological pathway differences in children who present with COVID-19 ARDS compared to COVID -19 induced MIS-C
...-19 developing clinical features of Kawasaki-disease have been described. Methods: We utilised SWATH-MS proteomics to determine the plasma proteins expressed in healthy children, children with multisystem inflammatory syndrome (MIS-C) and children with COVID-19 induced ARDS. Pathway analyses were pe...
ORGANISM(S): Homo Sapiens (human) 
2022-04-06 | PXD025125 | Pride
Proteomics Swath 
0
UnknownGenotype-Guided Dosing of Warfarin in Chinese Adults: A Multicenter Randomized Clinical Trial.
Not available
S-EPMC7439928 | biostudies-literature
0
ProteomicsComprehensive proteomic profiling of aqueous humor in idiopathic uveitis and Vogt-Koyanagi-Harada syndrome
...ntly different from normal controls, whereas relatively minor inter-group variation was observed. Differential analysis revealed a shared pattern of extracellular matrix disruption in IU and VKH groups and, more importantly, downregulation of retinal cellular proteins highlighting the value of AH as ...
ORGANISM(S): Homo Sapiens 
2023-04-04 | PXD041318 |
0
ProteomicsProteomics analysis of three tea cultivars
To decipher phenotypic differences in flavonoid metabolism and the abundance of UGT enzymes involved in flavonol glycoside biosynthesis, an integrated proteomics and metabolomics analysis was conducted on three tea cultivars (Camellia sinensis), namely Jinfenghuang, Fuyun 6 and Bantianyao.
ORGANISM(S): Camellia Sinensis 
2024-01-30 | PXD048997 |
0
ProteomicsHuman bladder cancer LC MS/MS
Urine is an ideal material to study and examine the bladder cancer (BCa) biomarkers, whereas exploration to the corresponding protein candidates is confronting technique challenges. Herein, we proposed a comprehensive strategy of searching the urine proteins related to BCa. The strategy consists of t...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-28 | MSV000080696 | MassIVE
0
ProteomicsProteomic landscape of plasma and plasma-derived sEVs and lEVs in uveitis and posterior scleritis
...and posterior scleritis are sight-threatening diseases with undefined pathogenesis, accurate diagnosis remains challenging. Here, two plasma-derived extracellular vesicle (EV) subpopulations, small and large EVs, were obtained from patients with uveitis and posterior scleritis and subjected to proteo...
ORGANISM(S): Homo Sapiens 
2022-09-19 | PXD036844 |
0
MetabolomicsLipidomics profiling reveals the role of glycerophospholipid metabolism in psoriasis
...nd detected. Statistical analysis was applied to find different features between the disease and control groups. In addition, ELISA was performed to examine differentially-expressed lipids in psoriatic patient plasma. We finally identified several differential expression lipids including LPAs, LysoPC...
2017-08-22 | MTBLS408 | MetaboLights
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