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E-GEOD-62895

ABSTRACT: Gene expression in rice roots in response to inoculation with rice blast fungus

PROVIDER: E-GEOD-62895 | ExpressionAtlas | 2015-12-02

REPOSITORIES: ExpressionAtlas

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			Action	DRS
	E-GEOD-62895-analysis-methods.tsv	Tabular
	E-GEOD-62895-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-62895-configuration.xml	Xml
	E-GEOD-62895-configuration.xml.beforeQC	Xml
	E-GEOD-62895-percentile-ranks.tsv	Tabular

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E-GEOD-62894

Project description:Gene expression in rice leaves (Pish) in response to inoculation with rice blast fungus

2016-01-04 | E-GEOD-62894 | ExpressionAtlas

Gene expression in rice roots in response to inoculation with rice blast fungus

Project description:Rice roots grown in hydroponic culture were inoculated with rice blast fungus and gene expression profiles were analyzed by microarray Roots of two isogenic lines of rice cv Nipponbare (blast-resistance gene: Pia or pia) were inoculated with rice blast fungus, P91-15B, carrying avirulence gene, AvrPia. Total RNA was isolated from crown roots, labeled with cy3, and probed with agilent rice oligoarray (4x44).

2015-04-01 | E-GEOD-62895 | biostudies-arrayexpress

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Project description:Gene expression in rice roots in response to inoculation with rice blast fungus

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Gene expression in rice roots in response to inoculation with rice blast fungus

Project description:Rice roots grown in hydroponic culture were inoculated with rice blast fungus and gene expression profiles were analyzed by microarray

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E-GEOD-62893

Project description:Transcription profiling by array of two isogenic lines of rice, NP/++ and NP/Pia, compatible and incompatible with M. oryzae in response to inoculation with rice blast fungus

2015-11-26 | E-GEOD-62893 | ExpressionAtlas

E-GEOD-47195

Project description:SALT-RESPONSIVE ERF1 expression profiling in rice roots

2015-05-13 | E-GEOD-47195 | ExpressionAtlas

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Project description:Gene expression in rice leaves (Pish) in response to inoculation with rice blast fungus

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Project description:Gene expression in rice leaves (Pia) in response to inoculation with rice blast fungus

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Transcription profiling of rice cv. Nipponbare roots infected with Magnaporthe oryzae strain Guy11

Project description:Magnaporthe oryzae causes rice blast, the most devastating foliar fungal disease of cultivated rice. During disease development the fungus simultaneously maintains both biotrophic and necrotrophic growth corresponding to a hemi-biotrophic life style. The ability of M. oryzae to also colonize roots and subsequently develop blast symptoms on aerial tissue has been recognized. The fungal root infection strategy and the respective host responses are currently unknown. Global temporal expression analysis suggested a purely biotrophic infection process reflected by the rapid induction of defense response-associated genes at the early stage of root invasion and subsequent repression coinciding with the onset of intracellular fungal growth. The same group of down-regulated defense genes was increasingly induced upon leaf infection by M. oryzae where symptom development occurs shortly post tissue penetration. Our molecular analysis therefore demonstrates the existence of fundamentally different tissue-specific fungal infection strategies and provides the basis for enhancing our understanding of the pathogen life style. Experiment Overall Design: We investigated global transcriptome response overtime of Mock- and M. oryzae inoculated rice root tissue in vitro. Two independant replicates were perfomed for each treatments and samples were collected at 2, 4 and 6 days post-inoculation.

2009-10-09 | E-GEOD-18361 | biostudies-arrayexpress

Gene expression in rice leaves (Pia) in response to inoculation with rice blast fungus

Project description:Fourth leaves of rice seedlings (4.5 leaf stage) grown in hydroponic culture were inoculated with rice blast fungus and gene expression profiles were analyzed by microarray. Fourth leaves of the two isogenic lines of rice cv Nipponbare (blast-resistance gene: Pia or its mutant, pia) were inoculated with rice blast fungus, P91-15B, carrying avirulence gene, AvrPia. Total RNA was isolated, labeled with cy3, and probed with agilent rice oligoarray (4x44).

2015-04-01 | E-GEOD-62893 | biostudies-arrayexpress

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