Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-10292

ABSTRACT: Microarray analysis of MRC-5 cells infected with Zika virus strains

PROVIDER: E-MTAB-10292 | ExpressionAtlas | 2025-01-23

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Similar Datasets

Mus musculus

Project description:Microarray analysis of Japanese encephalitis virus infected Neuro2a cells

| PRJNA125667 | ENA

Expression data from memory P14 transgenic T cells

Project description:Microarray analysis was used to compare differences and similarities in gene expression patterns between memory CD8+ T cells from mice infected with lymphocytic choriomeningitis virus (LCMV) or influenza virus. Keywords: infection response

2015-02-25 | GSE10214 | GEO

Transcription profiling by array of Vero cells infected by different Chikungunya virus strains to identify common human host genes involved in pathogenesis of different Chikungunya viruses

Project description:In this study, we aim to identify common host genes involved in pathogenesis of different Chikungunya virus strains as an attempt to recognize probable antiviral targets. We have compared the host gene regulation after infection of monkey kidney cell line (Vero) with two different wild type CHIKV strains i.e. S 27 (human, ECSA), and DRDE-06 (human, ECSA). Vero cells were mock infected or infected with two Chikungunya virus strains (S 27 and DRDE-06) and harvested at 8hpi and 18hpi. The total RNA was extracted and microarray was done using Agilent protocol.

2021-10-28 | E-MTAB-6645 | biostudies-arrayexpress

Identification of common human host genes involved in pathogenesis of different rota virus strains-an attempt to recognize probable antiviral targets

Project description:In this study, we aim to identify common human host genes involved in pathogenesis of different rota virus strains as an attempt to recognize probable antiviral targets. We have compared the host gene regulation after infection of human intestinal cell line (HT29) with three different wild type RV strains i.e. SA11 (simian, G3, P2), A5-13 (bovine, G8, P1) and Wa (human, G1, P8). HT29 cells mock infected or infected with three rota virus strains (SA11, A5-13, Wa). At 5hpi total RNA was extracted and microarray was done using Affymetrix protocol.

2013-06-30 | E-MEXP-3670 | biostudies-arrayexpress

Arabidopsis transcriptome microarray from virus infected plants. Functional Genomic study in virus-infected plants.

Project description:au07-02_trv - arabidopsis transcriptome microarray from virus infected plants. - mRNA expression profile in virus-infected Arabidopsis. - Arabidopsis transcriptome microarray from virus infected plants. Keywords: normal vs disease comparison

2009-04-10 | GSE15562 | GEO

miRNA analysis of Zika infected neural stem cells

Project description:small RNA-seq was utilized to characterize the transcriptome of human neural stem cells infected with Zika virus strains MR766 and Paraiba at MOI 1. Coding and noncoding genes were analyzed to determine transcriptional changes 3 days post-infection.

2019-06-18 | GSE113639 | GEO

Arabidopsis transcriptome microarray from virus infected roots. Functional Genomic study in virus-infected plants.

Project description:au07-02_trv - arabidopsis transcriptome microarray from virus infected roots. - mRNA expression profile in virus-infected Arabidopsis. - Arabidopsis miRNA/transcriptome microarray from virus infected roots of plants. Keywords: normal vs disease comparison

2009-04-10 | GSE15558 | GEO

Characterization of genetic variability of Venezuelan equine encephalitis viruses

Project description:We performed whole genome single nucleotide polymorphism (SNP) based analysis of all available Venezuelan equine encephalitis (VEE) virus antigenic complex genomes and developed a high resolution genome-wide SNP microarray. We used the SNP microarray to analyze a broad panel of VEEV isolates, found excellent concordance between array and sequence based genotypes for previously sequenced strains, and genotyped unsequenced strains.

2016-03-24 | GSE79530 | GEO

Glioblastoma stem cells infected by ZIKA virus

Project description:We repoted the Glioblastoma stem cells(GSCs) infected by two strains of ZIKA virus, the Brazil and Dakar strains. The ZIKV was added into the medium of GSCs for 48 hours, the RNA was harvested after ZIKV infection. We found that the GSCs up-regulated the Type 1&2 interferons after infected by ZIKV

2017-08-23 | GSE102924 | GEO

GNPS_Lipidomics charactarization of SARS infected 2B4 cells positive ionization

Project description:This submission corresponds to lipidomics analysis of 2B4 cells infected with SARS (icSARS CoV and icSARS CoV delta ORF 6 mutant) virus. Cells were mock-infected or infected with virus (n = 3 each) at an MOI of 5 and harvested at 0, 12, 24, 36, 48, 60, and 72 h post-infection. The lipids were analyzed with positive ionization.

2014-07-16 | MSV000078780 | GNPS

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data