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E-MTAB-2039

ABSTRACT: Transcription profiling by RNA-seq of nine tissues from Oryza sativa japonica Nipponbare

PROVIDER: E-MTAB-2039 | ExpressionAtlas | 2019-01-10

REPOSITORIES: ExpressionAtlas

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Dataset's files

Source:

			Action	DRS
	E-MTAB-2039-analysis-methods.tsv	Tabular
	E-MTAB-2039-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-2039-coexpressions.tsv.gz	Tabular
	E-MTAB-2039-configuration.xml	Xml
	E-MTAB-2039-configuration.xml~	Xml

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Project description:We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with Xanthomonas oryzae pv. oryzicola strain BLS354, the causal agent of bacterial leaf streak. Results provide insight into the molecular basis of bacterial leaf streak, particularly the role of transcription activator-like effectors in the disease. Examination of mRNA levels in Oryza sativa L. ssp. japonica cv. Nipponbare leaves at 48 hours after inoculation with Xanthomonas oryzae pv. oryzicola strain BLS354 with three biological replicates compared to three replicates of mock inoculated O. sativa as the control.

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