Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-2553

ABSTRACT: Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes

PROVIDER: E-MTAB-2553 | ExpressionAtlas | 2015-05-11

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-2553-analysis-methods.tsv	Tabular
	E-MTAB-2553-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-2553-configuration.xml	Xml
	E-MTAB-2553-percentile-ranks.tsv	Tabular
	E-MTAB-2553.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 88

Similar Datasets

LPMAPK

Project description:Transcription profiling by array of Arabidopsis MKK9DD (constitutively active MKK9 kinase mutant) overexpressing seedlings and Pi-starved wild type seedlings to identify the same regulated genes

2014-06-02 | E-MTAB-2553 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2

| PRJNA96013 | ENA

Trasncripional regulation by overexpression of constitutively active FOXO1 (CA-FOXO1) in human endothelial cells

Project description:To identify genes regulated by FOXO1, we performed RNA-seq analysis of human unbilical vein endothelial cells (HUVECs) overexpressing CA-FOXO1 by adenovirus. CA-FOXO1 is constructed by mutating three amino-acids phosphorylated by Akt, T24, S256, and S319, and is constitutively localized in the nucleus compared to wild-type FOXO1.

2024-03-01 | GSE220503 | GEO

JNK-dependent genes_rVSMC

Project description:Oxidative stress-dependent genes are defined as those induced or suppressed by H2O2 treatement in rat vascular smooth muscle cells. JNK-induced genes in rat vascular smooth muscle cells are defined as those induced by adenoviruses encoding constitutively active MKK7 (caMKK7) + wild type JNK1 (wtJNK1) and suppressed by adenovirus encoding dominant negative JNK1 (APF). JNK-suppressed genes in rat vascular smooth muscle cells are defined as those suppressed by adenoviruses encoding constitutively active MKK7 (caMKK7) + wild type JNK1 (wtJNK1) and induced by adenovirus encoding dominant negative JNK1 (APF). Adenovirus encoding nuclear localizing GFP was used as a control. Keywords = vascular smooth muscle Keywords = hydrogen peroxide Keywords = c-Jun N-terminal kinase Keywords = JNK Keywords = adenovirus Keywords = oxidative stress Keywords: repeat sample

2005-11-09 | GSE2190 | GEO

Comparison of gene expression regulated by WRKY6

Project description:WRKY6-overexpressing line 35S:WRKY6-9, knockout mutant wrky6-1 and wild-type seedlings were used to analyze genes whose expression are controlled under WRKY6.

2009-12-07 | GSE18273 | GEO

Overexpression of subtilate4.13

Project description:mutant seedlings overexpressing subtilase4.13 were grown in MS medium during 10 days comparing with wild type

2020-02-25 | GSE142459 | GEO

Determination of the VanS regulon in Clostridioides difficile

Project description:We isolated suppressors of a ∆ddl mutant strain with constitutively active allelles of the vanS gene. VanS is a histidine kinase of a two-component system that regulates expression of the vanG operon. Transcriptomes of wild-type and ∆ddl vanS (R334L) strains were compared.

2022-08-31 | GSE212197 | GEO

VuDREB2A activated transcription in wild type Arabidopsis: VuDREB2A overexpressor lines vs. wild type Arabidopsis

Project description:Transcriptional profiling of Arabidopsis overexpressing VuDREB2A (full length/truncated) compared to wild type. Unstressed three week-old whole seedlings were used. Goal was to search the genes upregulated byVuDREB2A in Arabidopsis.

2013-12-10 | GSE53113 | GEO

Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes

Project description:10-day-old wild-type and homozygous transgenic Arabidopsis seedlings (overexpressing OsTOP6A3 and OsTOP6B) grown under normal growth conditions were used for total RNA isolation. The 5 micrograms of each total RNA sample was processed for microarray analysis according to Affymetrix protocol. Keywords: Arabidopsis, wild-type and transgenic seedlings, differential gene expression

2006-08-09 | GSE5465 | GEO

Gene expression in wild-type and transgenic plants overexpressing rice OsTOP6A1 gene

Project description:10-day-old wild-type and homozygous transgenic Arabidopsis seedlings (overexpressing rice topoisomerase 6 subunit A1; OsTOP6A1) grown under normal growth conditions were used for total RNA isolation. The 5 micrograms of each total RNA sample was processed for microarray analysis according to Affymetrix protocol. Keywords: Arabidopsis, wild-type and transgenic seedlings, differential gene expression

2007-12-26 | GSE6812 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data