Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-5850

ABSTRACT: Microarray expression analysis of hearts of zebrafish tremblor mutants at 48 hpf compared to wild-type siblings.

PROVIDER: E-MTAB-5850 | ExpressionAtlas | 2017-06-16

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-5850-analysis-methods.tsv	Tabular
	E-MTAB-5850-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-5850-configuration.xml	Xml
	E-MTAB-5850-percentile-ranks.tsv	Tabular
	E-MTAB-5850.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 39

Similar Datasets

Gene expression profile of zebrafish tet2 mutant

Project description:Zebrafish hematopoietic cells from kidney marrow from zebrafish tet2 mutants were compared to wild-type

2020-09-01 | GSE136349 | GEO

Methylation and Hydroxymethylation profile of zebrafish tet2 mutant

Project description:Zebrafish hematopoietic cells from kidney marrow from zebrafish tet2 mutants were compared to wild-type

2020-09-01 | GSE136761 | GEO

Microarray expression analysis of hearts of zebrafish tremblor mutants at 48 hpf compared to wild-type siblings.

Project description:Zebrafish ncx1h (also known as slc8a1a) encodes a cardiac specific sodium-calcium exchanger 1 (NCX1h), a primary Ca 2+ efflux effector in cardiomyocytes. The zebrafish tremblor (tre) mutant lacks functional NCX1h and, consequentially, cyclic Ca2+ transients are abolished. In this study, we investigated the effect of aberrant Ca2+ homeostasis in cardiomyocytes on gene expression. Wild type and ncx1 mutant hearts at 48 hours post fertilization were isolated for RNA preparation and gene expression analysis was performed using an Affymetrix Zebrafish GeneChip.

2017-09-20 | E-MTAB-5850 | biostudies-arrayexpress

Comparison between wild type E. coli and adhE (alcohol dehydrogenase) mutants, grown under anaerobic condition

Project description:To characterize anaerobic stress-induced expression in adhE mutants, the microarray experiment was performed with two serotypes of wild type E. coli and their adhE mutants: (1) K-12 strain, wild type; (2) B strain, wild type; (3) BW25113, adhE mutants; (4) BL21(DE3), adhE mutants. Under anaerobic growth condition in glucose-containing complex medium, the wild type strains 1 and 2 grew well whereas the mutant strains 3 and 4 experienced anaerobic stress and grew after 24 hours and 48 hours, respectively.

2014-09-26 | GSE46455 | GEO

Transcriptome analysis on wild type and mvp mutant zebrafish ventricles at 7dpa by Next Generation Sequencing

Project description:In contrast to mammals, the adult zebrafish hearts can regenerate within a short period. Upregulation of major vault protein (Mvp) expression after ventricle resection. To determine the impact of loss of mvp on transcriptome during heart regeneration, we pursued transcriptome analysis (RNA-Seq) on wild type and mvp mutant zebrafish hearts at 7 day-post-amputation.

2020-09-01 | GSE157170 | GEO

Gene expression profile of zebrafish synpo2 mutant

Project description:Embryonic zebrafish synpo2 mutants were compared to wild-type (22 hpf)

2021-01-01 | GSE150046 | GEO

RNA-sequencing analysis of the KYSE150 cells overexpressing caspase-8 mutants (M4, M6, M10, M13) or wild-type caspase-8

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are using RNA sequencing analysis to test the effects of overexpressing caspase-8 mutants or wild-type caspase-8 on the mRNA of KYSE150 cells. Methods: KYSE150 cells were transfected with caspase-8 mutants or wild-type caspase-8 for 48 hours in 1640 medium plus 10% serum. Two independent replicates were plated, transfected in parallel for each caspase-8 mutants or wild-type caspase-8. Results: Log-fold changes of mRNAs between caspase-8 mutants and wild-type caspase-8 group were selected with a significance threshod of p<0.05. There are 3974 overlapping differentially expressed genes in the caspase-8 mutant cells compared to the wild-type caspase-8 cells. Conclusions: Our study determined the mRNA changes of caspase-8 mutant KYSE150 cells compared to the wild-type caspase-8 cells.

2022-03-17 | GSE198569 | GEO

Regulation of CpG methylation by the Glucocorticoid Receptor in zebrafish

Project description:The methylomes of whole adult zebrafish brains was compared in gr s357 mutants and wild type siblings

2023-09-01 | GSE120632 | GEO

Gene expression analysis in untreated adult zebrafish livers (~1 year older): wild-type TAB14 compared to as3mt-/- mutants

Project description:Gene expression analysis in untreated adult zebrafish livers (~1 year older): wild-type TAB14 compared to as3mt-/- mutants

| PRJNA951411 | ENA

Early gene expression of regenerating zebrafish hearts following water or atropine treatment

Project description:We report global RNA expression profiles from whole zebrafish hearts 24 hours after ventricle amputation. Zebrafish were exposed to atropine or water following surgery. 15 zebrafish hearts were pooled per microarray chip. Amputated hearts of zebrafish exposed to atropine was compared to hearts of zebrafish exposed to water.

2015-06-11 | E-GEOD-69775 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data