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E-MTAB-8444

ABSTRACT: RNA-Seq of SOX4 and HOXD3 CRISPR KO SupT1 cells against wildtype SupT1 cells during HIV-1 infection

PROVIDER: E-MTAB-8444 | ExpressionAtlas | 2025-01-16

REPOSITORIES: ExpressionAtlas

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			Action	DRS
	E-MTAB-8444-analysis-methods.tsv	Tabular
	E-MTAB-8444-analytics.tsv	Tabular
	E-MTAB-8444-apply_fixes_zooma_mappings.done	Other
	E-MTAB-8444-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-8444-configuration.xml	Xml

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RNA-Seq of SOX4 and HOXD3 CRISPR KO SupT1 cells against wildtype SupT1 cells during HIV-1 infection

Project description:poly-A enrichment RNASeq on RNA samples isolated from SupT1 cells with lentiviral mediated CRISPR SOX4 and HOXD3 KO against wildtype SupT1 during the time course of HIV infection (uninfected, 8, 18, 30 and 42hpi). SupT1 cells were spinofected with NLENG1-IRES G1I molecular HIV-1 clone. After RNA isolation, libraries were prepared with Ilumina TruSeq Stranded mRNA LT-Kit and sequenced on a llumina HiSeq 3000/4000 instrument.

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RNA-Seq of SOX4 and HOXD3 CRISPR KO SupT1 cells against wildtype SupT1 cells during HIV-1 infection

Project description:RNA-Seq of SOX4 and HOXD3 CRISPR KO SupT1 cells against wildtype SupT1 cells during HIV-1 infection

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