Dataset Information

Iwamoto2010 - Cell cycle reponse to DNA damage

ABSTRACT: After DNA damage, cells activate p53, a tumor suppressor gene, and select a cell fate (e.g., DNA repair, cell cycle arrest, or apoptosis). Recently, a p53 oscillatory behavior was observed following DNA damage. However, the relationship between this p53 oscillation and cell-fate selection is unclear. Here, we present a novel model of the DNA damage signaling pathway that includes p53 and whole cell cycle regulation and explore the relationship between p53 oscillation and cell fate selection. The simulation run without DNA damage qualitatively realized experimentally observed data from several cell cycle regulators, indicating that our model was biologically appropriate. Moreover, the comprehensive sensitivity analysis for the proposed model was implemented by changing the values of all kinetic parameters, which revealed that the cell cycle regulation system based on the proposed model has robustness on a fluctuation of reaction rate in each process. Simulations run with four different intensities of DNA damage, i.e. Low-damage, Medium-damage, High-damage, and Excess-damage, realized cell cycle arrest in all cases. Low-damage, Medium-damage, High-damage, and Excess-damage corresponded to the DNA damage caused by 100, 200, 400, and 800 J/m(2) doses of UV-irradiation, respectively, based on expression of p21, which plays a crucial role in cell cycle arrest. In simulations run with High-damage and Excess-damage, the length of the cell cycle arrest was shortened despite the severe DNA damage, and p53 began to oscillate. Cells initiated apoptosis and were killed at 400 and 800 J/m(2) doses of UV-irradiation, corresponding to High-damage and Excess-damage, respectively. Therefore, our model indicated that the oscillatory mode of p53 profoundly affects cell fate selection.

SUBMITTER: Matthieu MAIRE

PROVIDER: BIOMD0000000939 | BioModels | 2024-09-02

REPOSITORIES: BioModels

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	BIOMD0000000939?filename=Iwamoto2010-biopax2.owl	Owl
	BIOMD0000000939?filename=Iwamoto2010-biopax3.owl	Owl
	BIOMD0000000939?filename=Iwamoto2010-matlab.m	Other
	BIOMD0000000939?filename=Iwamoto2010-octave.m	Other
	BIOMD0000000939?filename=Iwamoto2010.cps	Other

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Publications

Mathematical modeling of cell cycle regulation in response to DNA damage: exploring mechanisms of cell-fate determination.

Iwamoto Kazunari K Hamada Hiroyuki H Eguchi Yukihiro Y Okamoto Masahiro M

Bio Systems 20101121 3

After DNA damage, cells activate p53, a tumor suppressor gene, and select a cell fate (e.g., DNA repair, cell cycle arrest, or apoptosis). Recently, a p53 oscillatory behavior was observed following DNA damage. However, the relationship between this p53 oscillation and cell-fate selection is unclear. Here, we present a novel model of the DNA damage signaling pathway that includes p53 and whole cell cycle regulation and explore the relationship between p53 oscillation and cell fate selection. The ...[more]

PMID: 21095219

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