Robinson2020 - generic genome-scale metabolic model of Homo sapiens - Human1
Ontology highlight
ABSTRACT:
SUBMITTER: 
Yu Chen
PROVIDER: MODEL2204280001 | BioModels | 2022-04-28
REPOSITORIES: BioModels
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| MODEL2204280001?filename=FROG%20report%20of%20Human1.zip | Other | |||
| MODEL2204280001?filename=Human-GEM.xml | Xml |
Items per page: 5 1 - 2 of 2 |
Similar Datasets
Project description:This is genome-scale metabolic model of Alloascoidea hylecoeti as the representative yeast species for the clade Alloascoideaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130002. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Alloascoidea hylecoeti. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130002 | BioModels
Project description:This is genome-scale metabolic model of Sporopachydermia quercuum as the representative yeast species for the clade Sporopachydermia. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (doi:10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109240002. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Sporopachydermia quercuum; Sporopachydermia lactativora. These models are available in the zip file.. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109240002 | BioModels
Project description:This is genome-scale metabolic model of Hanseniaspora uvarum as the representative species for the clade Saccharomycodaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130013. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Hanseniaspora uvarum; Hanseniaspora valbyensis; Hanseniaspora vineae; Hanseniaspora osmophila; Hanseniaspora clermontiae; Kloeckera hatyaiensis; Hanseniaspora pseudoguilliermondii; Hanseniaspora singularis. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130013 | BioModels
Project description:This is genome-scale metabolic model of Pachysolen tannophilus as the representative yeast species for the clade CUG-Ala. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427
), currently hosted on BioModels Database and identified by MODEL2109130004. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Nakazawaea peltata; Pachysolen tannophilus; Peterozyma xylosa; Peterozyma toletana; Nakazawaea holstii. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130004 | BioModels
Project description:This is genome-scale metabolic model of Tortispora caseinolytica as the representative species for the clade Trigonopsidaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130011. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Tortispora caseinolytica; Botryozyma nematodophila; Tortispora starmeri; Trigonopsis vinaria; Trigonopsis variabilis; Tortispora ganteri. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130011 | BioModels
Project description:This is genome-scale metabolic model of Ascoidea rubescens as the representative yeast species for the clade CUG-Ser2. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130005. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Ascoidea asiatica; Ascoidea rubescens; Saccharomycopsis malanga; Saccharomycopsis capsularis. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130005 | BioModels
Project description:This is genome-scale metabolic model of Lipomyces starkeyi as the representative yeast species for the clade Lipomycetaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130006. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Lipomyces starkeyi; Lipomyces suomiensis; Lipomyces oligophaga; Lipomyces mesembrius; Lipomyces arxii; Lipomyces doorenjongii; Lipomyces japonicus; Lipomyces kononenkoae; Lipomyces lipofer. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109130006 | BioModels
Project description:yeast-GEM: The consensus genome-scale metabolic model of Saccharomyces cerevisiae. Further curations of this model will be tracked in the GitHub repository:https://github.com/SysBioChalmers/yeast-GEM For you use yeast-GEM, please cite the yeast8 paper: Lu, H. et al. A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. Nature Communications 10, 3586 (2019). https://doi.org/10.1038/s41467-019-11581-3. The FROG analysis was performed with the yeastGEM_rich_medium.mat, which is a rich medium setup.
2024-09-02 | BIOMD0000001063 | BioModels
Project description:This is genome-scale metabolic model of Schizosaccharomyces pombe as the representative species for the clade Ascomycota. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109240001. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Arthrobotrys oligospora; Aspergillus nidulans; Botrytis cinerea; Coccidioides immitis; Fusarium graminearum; Neurospora crassa; Saitoella complicata; Schizosaccharomyces pombe; Sclerotinia sclerotiorum; Stagonospora nodorum; Xylona heveae. These models are available in the zip file.. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.
2021-11-01 | MODEL2109240001 | BioModels
Project description:Homo sapiens fresh whole blood was infected with Candida parapsilosis. RNA-pool of both species extracted at 0min (control), 15, 30, 60, 120, 240 min. Samples are rRNA depleted. Measurement of Homo sapiens gene expression.
2018-12-26 | GSE114177 | GEO