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Moore2023 - Gloeocapsopsis dulcis model


ABSTRACT: This is the first genome-scale model of G. dulcis, an extremely desiccation-tolerant cyanobacterium isolated from the Atacama desert by Azua-Bustos et al. (2014). We sequenced, closed, and annotated the G. dulcis genome, and created the model using KBase, and COBRApy. We included cyanobacterium-based photosynthesis reactions based on Toyoshima et al. (2020).

SUBMITTER: Rachel A Moore  

PROVIDER: MODEL2303050001 | BioModels | 2024-12-18

REPOSITORIES: BioModels

Dataset's files

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Action DRS
MODEL2303050001?filename=G._dulcis_SBML_model_v2.xml Xml
MODEL2303050001?filename=G._dulcis_excel_model.xlsx Xlsx
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Publications

Unveiling metabolic pathways involved in the extreme desiccation tolerance of an Atacama cyanobacterium.

Moore Rachel A RA   Azua-Bustos Armando A   González-Silva Carlos C   Carr Christopher E CE  

Scientific reports 20230922 1


Gloeocapsopsis dulcis strain AAB1 is an extremely xerotolerant cyanobacterium isolated from the Atacama Desert (i.e., the driest and oldest desert on Earth) that holds astrobiological significance due to its ability to biosynthesize compatible solutes at ultra-low water activities. We sequenced and assembled the G. dulcis genome de novo using a combination of long- and short-read sequencing, which resulted in high-quality consensus sequences of the chromosome and two plasmids. We leveraged the G  ...[more]

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