Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of Arabidopsis Col vs Ler, perfomed at VIB

ABSTRACT: aVIB-Col_vs_aVIB-Ler

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Dawn Little

PROVIDER: E-CAGE-4 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Arabidopsis Columbia-0 plants in 2 technical replicates

Project description:Technical replicates with 2 hybridizations (cat 350 and cat175) 1.04 agar Arabidopsis thaliana - columbia-0 plants, RNA-extracted by VIB, and amplified and hybridized at UNIL.

2005-01-01 | E-CAGE-2 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Col-0self vs self experiment, performed at VIB

Project description:aVIB-Col_vs_aUNIL-Col

2005-01-01 | E-CAGE-3 | biostudies-arrayexpress

Transcription profiling of Arabidopsis self vs self experiment, performed at UNIL

Project description:Self vs self comparison of 2 samples of similar A.thaliana plants, extracted and amplified separately hybridized onto the CATMA array.

2005-01-01 | E-CAGE-1 | biostudies-arrayexpress

Transcription profiling of Arabidopsis leaves 1 and 2 from plants at different developmental stages

Project description:Leaf 1+2

2006-10-31 | E-CAGE-103 | biostudies-arrayexpress

Transcription profiling of Arabidopsis leaves from plants at different developmental stages

Project description:Leaves harvested at different developmental stages from Arabidopsis plants

2006-10-31 | E-CAGE-61 | biostudies-arrayexpress

Transcription profiling of cotyledons from wild type and mutant Arabidopsis plants infected with Hyaloperonospora parasitica for different time periods

Project description:A. thaliana CAGE compendim of gene expression pathogen infected cotyledon

2006-10-31 | E-CAGE-154 | biostudies-arrayexpress

ntr-Transcriptomic study of a thioredoxin reductase knock-out mutant.

Project description:rs04-02_ntr - ntr - Thioredoxins are small redox proteins implicated in crucial pathways of cell life. They are reduced by a conserved flavoprotein named NADPH-dependent thioredoxin reductase (NTR). In order to give an insight into the functions of the NTR/thioredoxin pathway in Arabidopsis, we have used a reverse genetic approch. Both NTR genes (NTRA and NTRB) have been inactivated in the double ntra ntrb mutant. T-DNA lines have been provided by the SALK library. Surprisingly, this mutant shows a limited phenotype suggested that some additional redox pathways are involved in compensating the inactivation of the NTR/thioredoxin pathway. In order to isolate compensatory genes that would be transcriptionally induced in the ntra ntrb mutant, we have performed this CATMA project. - Comparison of the transcript profile of the ntra ntrb knock-out mutant vs Col-0 wild-type ecotype. Seeds of the wild-type Col-0 ecotype and of the ntra ntrb homozygote double mutant were sowed in soil. Three replicates of lines were made (Col-0 1, 2 and 3 ntra ntrb 1, 2 and 3) : plants were put at different places of the greenhouse and grown at different times. Germination was synchronized by 4 days at 4degreeC and plants were grown during 17 days, until they reached a 6 rosette leaves stage. Entire plants (30 plants per sample) were harvested, frozen in liquid nitrogen and stored at 80degreeC until extraction. Keywords: gene knock out,wt vs mutant comparison 3 dye-swap - CATMA arrays

2007-06-19 | E-GEOD-7998 | biostudies-arrayexpress

Transcription profiling of Arabidopsis cotyledons infected with Hyaloperonospora parasitica for different time periods

Project description:A. thaliana CAGE compendim of gene expression pathogen infected cotyledon

2006-10-31 | E-CAGE-155 | biostudies-arrayexpress

Transcription profiling of wild type and Kdo Transferase mutant Arabidposis plants to investigate the effects on cell-wall biosynthesis

Project description:Comparison of RNA levels between wild type and a Kdo Transferase mutant in Arabidopsis thaliana. We are interested by the cell-wall biosyntheis in the Arabidopsis thaliana plants which are affected in Kdo biosynthesis.

2007-03-23 | E-MEXP-798 | biostudies-arrayexpress

Transcription profiling of Arabidopsis SET mutants

Project description:transcriptom profiling in Arabidopsis mutants

2006-11-15 | E-MEXP-302 | biostudies-arrayexpress