Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

31 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pulmonary melanoma metastasis

ABSTRACT: This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/In this experiment, we have injected mice with fluorescent melanoma cells and then collected their lungs 1-3 days later and run them through a flow cytometer to separate the fluorescent cells (i.e., the melanoma cells) from the non-sluprescent cells (i.e., the lung cells) so we can sequence their transcriptomes to identify the transciptional profiles associated with pulmonary melanoma metastasis.

INSTRUMENT(S): Illumina MiSeq

ORGANISM(S): Mus musculus

SUBMITTER:

PROVIDER: E-ERAD-287 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Mouse melanoma cell lines transcriptome sequencing

Project description:n this project we have sequenced the transcriptome of several comonly used mouse melanoma cell lines. Our aim is to understand what mutations and rearrangements are found in these cell lines to gain a better understanding of the genes that contribute to melanomagenesis. As these cell lines are used as models of melanoma these sequences represent an important resource for functional studies. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2015-01-17 | E-ERAD-94 | biostudies-arrayexpress

Single cell transcriptomics of CASTxB6 F1 mouse olfactory and liver cells

Project description:High-throughput sequencing of individual liver cells from adult B6Cast F1 female mice.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-08-04 | E-ERAD-283 | biostudies-arrayexpress

Time series transcription factor binding events during Th2 differentiation

Project description:We use ChIP-seq to investigate key TF binding events during mouse Th2 cells differentiation.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2015-01-08 | E-ERAD-339 | biostudies-arrayexpress

dCas9VP iPS genetic screenin in Mice

Project description:Detection of activated genes in mouse iPS cells to screen for iPS reprogramming genes.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2015-05-12 | E-ERAD-364 | biostudies-arrayexpress

TTV018 RORC IBD associated genotype effects on RORgT expression and function in ex vivo T cells

Project description:RNA sequencing of peripheral immune cells from patients +/- an IBD risk variant. Peripheral immune cells +/- in vitro test compound treatment.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2016-07-11 | E-ERAD-443 | biostudies-arrayexpress

Transcriptomics study of mouse and human macrophage and intestinal organoids in response to pathogen

Project description:Aim of this study is to understand the transcriptional response of macrophages and intestinal epithelial cells to pathogen challenge.These data are part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-11-18 | E-ERAD-310 | biostudies-arrayexpress

Transcriptomic analysis of investigation of the Type VII protein secretion system in Staphylococcus aureus

Project description:RNA-Seq on 8 samples with cells harvested at mid log phase to investigate T7SS system in Staphylococcus aureus.These data are part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2015-05-26 | E-ERAD-362 | biostudies-arrayexpress

ZF adult transcriptome

Project description:Total RNA was extracted from adult male and female zebrafish. Illumina cDNA libraries were prepared from polyA+ RNA and sequenced using Illumina HiSeq paired-end sequencing. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ protocol: Total RNA was extracted from zebrafish embryos using Trizol and DNase treated. Libraries were made using the Illumina cDNA protocol from polyA+ RNA.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2013-01-07 | E-ERAD-54 | biostudies-arrayexpress

ZFP106 expression profile

Project description:This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2013-03-11 | E-ERAD-111 | biostudies-arrayexpress

ChIP Seq Based Gene Screening in Mice

2014-01-28 | E-ERAD-187 | biostudies-arrayexpress