Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

The trait of MS: Altered transcription regulation of nuclear receptors networks operate in the pre-disease state


ABSTRACT: Molecular mechanisms that influence susceptibility to multiple sclerosis are poorly understood. We conducted a gene expression study in healthy subjects that subsequently developed the disease. Gene expression profiles (HG U133A and A2, Affymetrix, 22,215 transcripts) of peripheral blood mononuclear cells were analyzed in 9 healthy subjects (mean age 19.8+1.1 years) up to 9 years (mean 5.1±1.2 years) before onset of MS (MS to be, MS2b), 11 age-, gender-, and origin-matched subjects that remained MS-free (MSf), and 31 clinically isolated syndrome (CIS) patients. Most informative genes (p<0.05) and significant biological processes were compared. 1051 genes (611 up-regulated, 440 down-regulated) were significantly different between MS2b and MSf subjects. MS2b signature was characterized by down-regulation of the nuclear receptor (NR) family genes including NR subfamily 4 group A member1 (NR4A1, p=0.01), member 3 (NR4A3, p=0.01), NR subfamily 2 group F member 2 (NR2F1, p=0.03) and vitamin D receptor (VDR, p=0.02), all known to be involved in T-cell regulation by apoptosis. Comparison between MS2b and CIS operating networks demonstrated evolution of the altered NR dependent apoptosis regulation. Decreased NR4A1 expression was verified at the mRNA and protein level in an independent cohort of 20 relapsing-remitting MS patients. The identified MS trait is associated with suppressed transcription of NR networks that leads to altered apoptosis of activated T cells and the development of clinical disease. MS2b subjects have already an ongoing process that eventually will lead to clinical disease and our finding are of importance as they suggest the possibility of early detection and prevention of MS. Keywords: disease state analysis Blood samples of healthy subjects that later developed MS (MS-to-be, MS2b, N=9) were identified and used for gene expression study. For each sample of MS2b subject, a sample of an age and gender matched subject that remained MS-free (MSf, N=11) was randomly selected. A cohort of 31 CIS patients who gave blood sample for gene expression analysis within 3 months of the onset of their first neurological event, was used for comparison with the MS2b gene expression signature. For establishment of the CIS gene expression signature, microarray data from 13 age- and sex- matched healthy subjects were used.

ORGANISM(S): Homo sapiens

SUBMITTER: Michael Gurevich 

PROVIDER: E-GEOD-14895 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Microarray analysis identifies altered regulation of nuclear receptor family members in the pre-disease state of multiple sclerosis.

Achiron Anat A   Grotto Itamar I   Balicer Ran R   Magalashvili David D   Feldman Anna A   Gurevich Michael M  

Neurobiology of disease 20100114 2


Molecular mechanisms that influence susceptibility to multiple sclerosis are poorly understood. We analyzed peripheral blood gene expression profiles in nine healthy subjects up to nine years before the onset of multiple sclerosis in comparison with 11 age-, gender-, and origin-matched healthy subjects who remained multiple sclerosis-free, and 31 subjects during the first clinical episode of multiple sclerosis. Within the 1051 highly variable genes that differentiated between multiple sclerosis-  ...[more]

Similar Datasets

2010-02-17 | GSE14895 | GEO
2023-01-31 | E-MTAB-11415 | biostudies-arrayexpress
2019-07-26 | MSV000084137 | MassIVE
2009-05-09 | GSE16028 | GEO
2024-01-26 | PXD044445 | Pride
2009-05-17 | E-GEOD-16028 | biostudies-arrayexpress
2009-01-13 | E-GEOD-13732 | biostudies-arrayexpress
2021-01-27 | GSE146383 | GEO
2023-07-18 | GSE237552 | GEO
2023-07-18 | GSE237555 | GEO