Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptomic comparison of fructose and lipid grown cultures of Ralstonia eutropha H16


ABSTRACT: Whole genome gene expression analysis was examined with Ralstonia eutropha strain H16 cultures grown in PHB production medium (recipe per Peoples and Sinskey, 1989) containing fructose or trioleate as the main carbon source. The goal of this analysis was to determine the identity of the triacylglycerol and fatty acid breakdown genes in R. eutropha strain H16. In the study presented here, triplicates of R. eutropha strain H16 were examined for changes in expression of 6702 genes during growth and PHB production on each carbon source.

ORGANISM(S): Cupriavidus necator

SUBMITTER: Christopher Brigham 

PROVIDER: E-GEOD-21145 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Elucidation of beta-oxidation pathways in Ralstonia eutropha H16 by examination of global gene expression.

Brigham Christopher J CJ   Budde Charles F CF   Holder Jason W JW   Zeng Qiandong Q   Mahan Alison E AE   Rha Chokyun C   Sinskey Anthony J AJ  

Journal of bacteriology 20100813 20


Ralstonia eutropha H16 is capable of growth and polyhydroxyalkanoate production on plant oils and fatty acids. However, little is known about the triacylglycerol and fatty acid degradation pathways of this bacterium. We compare whole-cell gene expression levels of R. eutropha H16 during growth and polyhydroxyalkanoate production on trioleate and fructose. Trioleate is a triacylglycerol that serves as a model for plant oils. Among the genes of note, two potential fatty acid β-oxidation operons an  ...[more]

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