Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Genome-wide expression kinetics of children with T1D-associated autoantibodies compared to healthy matched controls II


ABSTRACT: To unravel genes and molecular pathways involved in the pathogenesis of type 1 diabetes (T1D), we performed genome-wide gene expression profiling of prospective venous blood samples from children developing T1D-associated autoantibodies or progressing towards clinical diagnosis. 58 peripheral blood RNA samples from 4 autoantibody-positive children and their matched controls were analyzed with Illumina Sentrix WG-6 v2 genome-wide arrays, in order to study the gene expression changes occuring during the pathogenesis of Type 1 diabetes (T1D). Each case child (positive for T1D-specific autoantibodies) was matched with a persistently autoantibody-negative control child, with the same HLA-DQB1 risk category, gender, and place and date of birth. Seroconversion is determined as the first detection of T1D-specific autoantibody/autoantibodies (ICA titre >4 JDFU, IAA >3.47 RU, GADA >5.4 RU, IA-2A >0.43 RU, ZnT8A >0.61 RU).

ORGANISM(S): Homo sapiens

SUBMITTER: Henna KallionpM-CM-$M-CM-$ 

PROVIDER: E-GEOD-30209 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications


The insult leading to autoantibody development in children who will progress to develop type 1 diabetes (T1D) has remained elusive. To investigate the genes and molecular pathways in the pathogenesis of this disease, we performed genome-wide transcriptomics analysis on a unique series of prospective whole-blood RNA samples from at-risk children collected in the Finnish Type 1 Diabetes Prediction and Prevention study. We studied 28 autoantibody-positive children, out of which 22 progressed to cli  ...[more]

Similar Datasets

2014-02-20 | E-GEOD-30208 | biostudies-arrayexpress
2014-02-20 | E-GEOD-30210 | biostudies-arrayexpress
2014-02-20 | E-GEOD-43488 | biostudies-arrayexpress
2022-02-16 | E-MTAB-10968 | biostudies-arrayexpress
2010-03-31 | E-TABM-666 | biostudies-arrayexpress
2022-03-09 | GSE185189 | GEO
2014-02-20 | GSE30210 | GEO
2014-02-20 | GSE30209 | GEO
2014-02-20 | GSE43488 | GEO
2014-02-20 | GSE30208 | GEO