Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana

ABSTRACT: Transcriptome of 4 developmental stages of Colletotrichum higginsianum during infection of Arabidopsis thaliana 3 biological replicates per stage. The four stages are : in vitro apressoria (VA), penetrating apressoria (AP), Biotrophic hyphea from the biotrophic phase (BH) and the switch from biotrophic hyphea to necrotrophic phase(SW). Each biological replicate of the last three stages, the in planta stages, was two fold deeper due to plant contamination (Arabidopsis thaliana)

ORGANISM(S): Colletotrichum higginsianum

SUBMITTER: Emiel Ver Loren van Themaat 

PROVIDER: E-GEOD-33683 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.

O'Connell Richard J RJ   Thon Michael R MR   Hacquard Stéphane S   Amyotte Stefan G SG   Kleemann Jochen J   Torres Maria F MF   Damm Ulrike U   Buiate Ester A EA   Epstein Lynn L   Alkan Noam N   Altmüller Janine J   Alvarado-Balderrama Lucia L   Bauser Christopher A CA   Becker Christian C   Birren Bruce W BW   Chen Zehua Z   Choi Jaeyoung J   Crouch Jo Anne JA   Duvick Jonathan P JP   Farman Mark A MA   Gan Pamela P   Heiman David D   Henrissat Bernard B   Howard Richard J RJ   Kabbage Mehdi M   Koch Christian C   Kracher Barbara B   Kubo Yasuyuki Y   Law Audrey D AD   Lebrun Marc-Henri MH   Lee Yong-Hwan YH   Miyara Itay I   Moore Neil N   Neumann Ulla U   Nordström Karl K   Panaccione Daniel G DG   Panstruga Ralph R   Place Michael M   Proctor Robert H RH   Prusky Dov D   Rech Gabriel G   Reinhardt Richard R   Rollins Jeffrey A JA   Rounsley Steve S   Schardl Christopher L CL   Schwartz David C DC   Shenoy Narmada N   Shirasu Ken K   Sikhakolli Usha R UR   Stüber Kurt K   Sukno Serenella A SA   Sweigard James A JA   Takano Yoshitaka Y   Takahara Hiroyuki H   Trail Frances F   van der Does H Charlotte HC   Voll Lars M LM   Will Isa I   Young Sarah S   Zeng Qiandong Q   Zhang Jingze J   Zhou Shiguo S   Dickman Martin B MB   Schulze-Lefert Paul P   Ver Loren van Themaat Emiel E   Ma Li-Jun LJ   Vaillancourt Lisa J LJ  

Nature genetics 20120812 9

Colletotrichum species are fungal pathogens that devastate crop plants worldwide. Host infection involves the differentiation of specialized cell types that are associated with penetration, growth inside living host cells (biotrophy) and tissue destruction (necrotrophy). We report here genome and transcriptome analyses of Colletotrichum higginsianum infecting Arabidopsis thaliana and Colletotrichum graminicola infecting maize. Comparative genomics showed that both fungi have large sets of pathog  ...[more]

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