Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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Prp4-1 temperature shift


ABSTRACT: Prp4-1 and wt strains were grown at 26°C to A600 of 1.0, then an equal volume of 48°C media was added to bring the temperature to 37°C. Both strains were allowed to grow at 37°C and samples were taken at 0 (before shift), 5, 15, 30, 60, and 120 mins after shift to restrictive temperature. Keywords = splicing

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Tyson Clark 

PROVIDER: E-GEOD-34 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays.

Clark Tyson A TA   Sugnet Charles W CW   Ares Manuel M  

Science (New York, N.Y.) 20020501 5569


Introns interrupt almost every eukaryotic protein-coding gene, yet how the splicing apparatus interprets the genome during messenger RNA (mRNA) synthesis is poorly understood. We designed microarrays to distinguish spliced from unspliced RNA for each intron-containing yeast gene and measured genomewide effects on splicing caused by loss of 18 different mRNA processing factors. After accommodating changes in transcription and decay by using gene-specific indexes, functional relationships between  ...[more]

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