Unknown,Transcriptomics,Genomics,Proteomics

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Systemic elevation of PTEN induces a tumor suppressive metabolic state

ABSTRACT: Decremental loss of PTEN results in cancer susceptibility and tumor progression. In turn this raises the possibility that PTEN elevation might be an attractive option for cancer prevention and therapy. We have generated several transgenic mouse lines with variably elevated PTEN expression levels, taking advantage of BAC (Bacterial Artificial Chromosome)-mediated transgenesis. Super-PTEN mutants are viable and show reduced body size due to decreased cell number, with no effect on cell size. Unexpectedly, PTEN elevation at the organism level results in healthy metabolism characterized by increased energy expenditure and reduced body fat accumulation. Cells derived from these mice show reduced glucose and glutamine uptake, increased mitochondrial oxidative phosphorylation, and are resistant to oncogenic transformation. Mechanistically we find that PTEN elevation orchestrates this metabolic switch by regulating PI3K-dependent and independent pathways, and negatively impacts two of the most pronounced metabolic features of tumor cells: glutaminolysis and the Warburg effect. In order to elucidate the pathophysiological impact of PTEN elevation, we generated transgenic mice carrying additional copies of this critical tumor suppressor gene (referred to as Super-PTEN mice). In order to maintain the regulation properties of the endogenous Pten gene, we made use of large genomic fragments containing the entire Pten locus carried by BACs (Bacterial Artificial Chromosomes). We next generated mouse embryonic fibroblasts (MEFs) and confirmed successful overexpression of PTEN by the BAC transgenic system. Primary cells derived from Super-PTEN mice represent a powerful tool to elucidate the molecular mechanisms underlying dose-dependent PTEN actions. We therefore performed microarray analysis in primary cells (MEFs) derived from day 13.5 embryos obtained by crossing Super-PTEN mice with C57BL6 mice. Three independent embryos from each genotype were analyzed (background: >98%C57BL6 / CBA). Gene expression profile analysis in these cells will reveal target genes and pathways differentially regulated upon PTEN elevation.

ORGANISM(S): Mus musculus

SUBMITTER: BIDMC Genomics

PROVIDER: E-GEOD-35670 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Project description:PTEN Harmatoma Tumor Syndrome is a collection of clinical diagnosis with patients harbouring germline mutation in the PTEN gene. Most affected individuals have extreme macrocephaly and autism spectrum disorders were diagnosed in ~10% of the patients. However, the underpinning molecular mechanisms are not fully defined. The aim of this study is to compare the transcriptomic profiles of somatosensory cortices from Pten+/- and wild-type littermates (C57Bl6/J) of female and male at P30 and P42, primary neural cells, neuroprogenitor cells (NPCs), cortical astrocytes (PCA) and cortical neurons (PCN) from C57Bl6/J mice, with wild-type (WT as control for Pten+/- or CTRL as control for Nes-KO), heterozygous (Pten+/-)and complete knockout of Pten (Nes-KO). The study included performing RNA sequencing of these tissues and neural cells and integrating the data with human autism candidate genes (SFARI), and enrichment with GWAS genes for neurological diseases and traits. Methods: RNA sequencing of the somatosensory cortices and primary neural cells: Somatosensory cortices are cut from female and male mice at P30 and P42. NPCs are from E12.5 embryons. PCNs are from E15.5 embryos. PCAs are from P0 or P2 pups. Samples were lysed in TRIzol and RNA was extracted with chloroform/isopropanol and ethanol. Poly-A eniched RNA was used for library contruction. Results: We identified widespread signature genes in different samples, with enhanced immune response and oligodendrocyte development in somatosensory cortex, suppressed immediate early response genes in Pten+/- neurons, upregulated cilium components in astrocyte and downregulated inhibitory neurons in Pten knockout neural cells through RNA sequencing, which further enriched in GWAS genes of schizophrenia. Conclusion: Our study represents the first detailed comprehensive RNA-sequencing of somatosensory cortex and individual types of neural cells of transgenic mice with Pten heterozygous and homozygous knockout. The result suggested Pten effects on dysregulated immune response, immediately early response, cilium function and interneurons development which would direct further molecular studies on neuropathologenic mechanisms for PHTS.

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Systemic elevation of PTEN induces a tumor suppressive metabolic state

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