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Transcript profiling of Arabidopsis msh1 mutants

ABSTRACT: The Arabidopsis msh1 mutant show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth. Wild type and msh1 RNAi variegated and stunted tissues were collected for RNA extration and hybridization on Affymetrix.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Ying-Zhi Xu

PROVIDER: E-GEOD-35893 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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The chloroplast triggers developmental reprogramming when mutS HOMOLOG1 is suppressed in plants.

Xu Ying-Zhi YZ Santamaria Roberto de la Rosa Rde L Virdi Kamaldeep S KS Arrieta-Montiel Maria P MP Razvi Fareha F Li Shaoqing S Ren Guodong G Yu Bin B Alexander Danny D Guo Lining L Feng Xuehui X Dweikat Ismail M IM Clemente Tom E TE Mackenzie Sally A SA

Plant physiology 20120409 2

Multicellular eukaryotes demonstrate nongenetic, heritable phenotypic versatility in their adaptation to environmental changes. This inclusive inheritance is composed of interacting epigenetic, maternal, and environmental factors. Yet-unidentified maternal effects can have a pronounced influence on plant phenotypic adaptation to changing environmental conditions. To explore the control of phenotypy in higher plants, we examined the effect of a single plant nuclear gene on the expression and tran ...[more]

PMID: 22496509

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High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

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High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

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Small RNA sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_sRNA-seq]

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