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Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field

ABSTRACT: A continuous gene expression profiling of leaves was performed at regular interval during a 48-hr period in 9 different growth stages from transplanting until harvesting to characterize the diurnal and circadian gene expression profile of rice and to understand the transcriptional program and physiological state throughout entire the growth under natural field conditions. The uppermost fully expanded leaf in the main stem was collected at 2-hr intervals during a 48-hr period at 9 different growth stages encompassing the vegetative, reproductive and ripening stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Yutaka Sato 

PROVIDER: E-GEOD-36040 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

RiceFREND: a platform for retrieving coexpressed gene networks in rice.

Sato Yutaka Y   Namiki Nobukazu N   Takehisa Hinako H   Kamatsuki Kaori K   Minami Hiroshi H   Ikawa Hiroshi H   Ohyanagi Hajime H   Sugimoto Kazuhiko K   Itoh Jun-Ichi J   Antonio Baltazar A BA   Nagamura Yoshiaki Y  

Nucleic acids research 20121124 Database issue

Similarity of gene expression across a wide range of biological conditions can be efficiently used in characterization of gene function. We have constructed a rice gene coexpression database, RiceFREND (http://ricefrend.dna.affrc.go.jp/), to identify gene modules with similar expression profiles and provide a platform for more accurate prediction of gene functions. Coexpression analysis of 27 201 genes was performed against 815 microarray data derived from expression profiling of various organs  ...[more]

PMID: 23180784

Publication: 1/2

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