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Diurnal and circadian gene expression profile of root throughout the entire growth of rice in the field

ABSTRACT: A continuous gene expression profiling of roots was performed at regular interval during a 48-hr period in 2 different growth stages to characterize the diurnal and circadian gene expression profile of rice growth under natural field conditions. Root was collected at 2-hr intervals during a 48-hr period at 2 different growth stages corresponding to early and late vegetative stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Yutaka Sato

PROVIDER: E-GEOD-39423 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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RiceFREND: a platform for retrieving coexpressed gene networks in rice.

Sato Yutaka Y Namiki Nobukazu N Takehisa Hinako H Kamatsuki Kaori K Minami Hiroshi H Ikawa Hiroshi H Ohyanagi Hajime H Sugimoto Kazuhiko K Itoh Jun-Ichi J Antonio Baltazar A BA Nagamura Yoshiaki Y

Nucleic acids research 20121124 Database issue

Similarity of gene expression across a wide range of biological conditions can be efficiently used in characterization of gene function. We have constructed a rice gene coexpression database, RiceFREND (http://ricefrend.dna.affrc.go.jp/), to identify gene modules with similar expression profiles and provide a platform for more accurate prediction of gene functions. Coexpression analysis of 27 201 genes was performed against 815 microarray data derived from expression profiling of various organs ...[more]

PMID: 23180784

Publication: 1/2

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