Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Atnsrs-study the role of AtNSRs proteins in the regulation of gene expression

ABSTRACT: blanc-08-01_2012_01_rnapaths_nsr - atnsrs - study the role of AtNSRs proteins in the regulation of gene expression - comparaison between Arabidopsis thaliana Col-0 and Atnsra/b double mutant treated or not with 24h 1ÂµM NAA 12 dye-swap - gene knock out

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Soubigou-Taconnat Ludivine

PROVIDER: E-GEOD-39659 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

septante project-Impact of genetically modified plants on bacteria from rhizosphere

Project description:rs11-02_opine - septante project - We have tools to estimate this modification for the bacterial part. On the other hand, concerning the plant part, we know plants produce opines compounds but we dont know if this expression can modify the transcriptional state of the plant. - Transgenic lines producing respectively octopine and mannopine and the WT line were grown in hydroponic tanks (containing nutritive solution) under short day conditions (8h light, 24Â°C). Whole plant aged of one month were harvested and frozen in nitrogen liquid. The plants were ground with a mortar and pestle and RNA extraction was performed with the RNeasy extraction kit (QIAGEN). The RNA concentration estimation was performed on a NANODrop spectrophotometer (Nanodrop). 6 dye-swap - normal vs transgenic comparaison

2012-03-21 | E-GEOD-30975 | biostudies-arrayexpress

rnapaths--3_02/2012-RNAPATHS-3

Project description:blanc-08-01_2012_01_rnapaths_03 - rnapaths--3_02/2012 - Identify the transcript overlap and specificity between the PTGS and decapping/exoribonuclease pathways b identifying transcripts that are significantly changed in double mutants versus single mutants, and transcripts that are commonly changed among the single and double mutants compared to WT. - Identify transcripts that are significantly changed in double mutants (L1 vcs sgs2) (xrn4-5/sgs3-11) versus their respective single mutants (L1 vcs and L1 sgs2) (xrn4-5 and sgs3-11) , and identify transcripts that are changed among the single and double mutants compared to WT (Col) reference or to mutant L1 reference. 20 dye-swap - genotype comparaison

2012-07-12 | E-GEOD-38903 | biostudies-arrayexpress

transcriptomic analysis of phosphatin effect-Phosphatin effect on Arabidopsis

Project description:cea11-02_phosphatin - transcriptomic analysis of phosphatin effect - Identification of transcriptomic modifications promoted by phosphatin (AC6) (a molecule mimicking Pi addition effects on Pi starved plants). - 40 ÂµM Phosphatin was added to MS (diluted 10 times) containing 20ÂµM phosphate medium and controls were grown on MS (diluted 10 times) containing 20ÂµM phosphate or supplemented with 500 ÂµM of Pi. For each ARN extraction their was 3 plates containing each 10 seedlings grown 13 days in vertical petri dishes. 6 dye-swap - treated vs untreated comparison

2013-04-11 | E-GEOD-45937 | biostudies-arrayexpress

Comparison after 4 and 52 h (Chloro-Sap)

Project description:cea12-02_chlorosap - comparison after 4 and 52h - To observe the effects of guanosine penta/tetraphosphate on gene expression - Plants of four different genotypes (43A10.6, 44B1.3, H1 P3.2 and Col-0) were grown for ten days on MS/2 plates with 1% sucrose under 80ÂµE light in long-day conditions (16 hours of light, 8 hours of dark). Plants were treated at 10:30 in the morning (Time 0; 10:30 is 3 and a half hours after the onset of the light period) by flooding with 30uM dexamethasone (in aqueous solution with 0,3 % DMSO and 0,033 % Silwet L-77) for 5 minutes . Samples were taken at 4 hrs and 52 hrs after T0. Aerial parts of the seedlings were rapidly harvested and frozen in liquid nitrogen. 9 dye-swap - normal vs transgenic comparaison,time course

2014-11-01 | E-GEOD-62656 | biostudies-arrayexpress

gene profiling of turnip crinkle virus (tcv) sirna-Gene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thaliana

Project description:rs10-05_tcv - gene profiling of turnip crinkle virus (tcv) sirna - 1. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in A.thaliana? 2. There are also differentially regulated during an evolution and a fitness process? - This is a plant evolution project on TCV in which, the biological questions are: 1. What are the genes (including miRNA precursors) that are differentially regulated in Col0 and dcl234 mutant in wt conditions? 2. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA in Col0 and dcl234 mutant? 3. There are also differentially regulated between the plant generations 1 (G1) and 11 (G11)? 4. What are the genes (including miRNA precursors) that are differentially regulated in a set of viral siRNA after fitness experiment? 24 dye-swap - gene knock out,treated vs untreated comparison

2012-03-31 | E-GEOD-29372 | biostudies-arrayexpress

au10-01_overexpressionoxi1-Transcriptomic analysis of the overexpression of Oxi1

Project description:au10-01_overexpressionoxi1 - au10-01_overexpressionoxi1 - Analysis of the overexpression of the Oxi1 - Comparision between the overexpression of oxi1 and wt. 2 dye-swap - normal vs transgenic comparison

2012-05-31 | E-GEOD-35941 | biostudies-arrayexpress

wt-col0_flagellin

Project description:au09-01_mpk_flagellin - wt-col0_flagellin Mitogen Activated Protein Kinase (MAPK) signaling pathways are key regulators of cell proliferation, differentiation and stress effectors. The core of the MAP kinase signal transduction cascade is composed of a three-kinase module consisting of a MAP kinase kinase kinase (MAPKKK), a MAP kinase kinase (MAPKK), and a MAP kinase (MAPK). The signaling pathway is activated upon stimulation by a phosphorylation cascade. Flagellin is a protein present in the flagellum of almost all bacteria and triggers Innate Immunity in plants, mediated by a MAPK phosphorylation signal cascade. To better understand the changes occuring in wt-Col0 flagellin treatment at the gene expression level, we would like to perform a microarray transcriptomic analysis. 1 dye-swap - treated vs untreated comparison

2012-01-31 | E-GEOD-34660 | biostudies-arrayexpress

transcriptomic analysis of wild type vs mpk3 mutants

Project description:au09-01_mpk mpk Mitogen Activated Protein Kinase (MAPK) signaling pathways are key regulators of cell proliferation, differentiation and stress effectors. The core of the MAP kinase signal transduction cascade is composed of a three-kinase module consisting of a MAP kinase kinase kinase (MAPKKK), a MAP kinase kinase (MAPKK), and a MAP kinase (MAPK). The signaling pathway is activated upon stimulation by a phosphorylation cascade. 2 dye-swap - wild type vs mutants

2012-01-31 | E-GEOD-34659 | biostudies-arrayexpress

myb118 mutation; Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb118 mutation.

Project description:ra12-06_myb118; myb118 mutation What are the genes over expressed or down regulated in seeds in response to a myb118 mutation? Plants of the different genotypes (wild-type, myb118 mutant, myb118 antisense lines named 0E3 and T16) were grown in a green house, their flower were tagged and seeds were harvested 10 days after anthesis. Seeds were extracted from the siliques, stored at -80Â°C prior to RNA extraction. 6 dye-swap - normal vs transgenic comparaison

2013-12-01 | E-GEOD-48180 | biostudies-arrayexpress

bHLH39 overexpression

Project description:au13-06_fit - bhlh39 overexpression - Analyse the responses to bHLH39 overexpression. bHLH39 is one of the transcription factors regulating iron homeostasis responses. - Six day-old seedlings (wild type and bHLH39 overexpressor) were grown on Hoagland medium. Full seedlings were harvested for analysis. 21 dye-swap - normal vs transgenic comparaison

2015-02-14 | E-GEOD-65934 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data