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A Unifying Model for Molecular Determinants of the Pre-selection VÎ² Repertoire [ChIP-chip]

ABSTRACT: Chip-chip from pro-T(DN) cells from Rag1KO mice for H3K27ac, P300 and FAIRE The primary antigen receptor repertoire is sculpted by the process of V(D)J recombination, which must strike a balance between diversification and favoring gene segments with specialized functions. The precise determinants of how often gene segments are chosen to complete variable region coding exons remain elusive. We have quantified VÎ² usage in the pre-selection Tcrb repertoire and report relative contributions of 14 distinct features in shaping their recombination efficiencies, including transcription, chromatin environment, spatial proximity to their DÎ²JÎ² targets, and quality of recombinase recognition elements. Computational analyses provide a unifying model, revealing a minimal set of eight parameters that are predictive of VÎ²usage, dominated by chromatin modifications associated with transcription, but largely independent of the precise spatial proximity to DÎ²JÎ²clusters. Rag1KO DN epigenetic landscape at Tcrb

ORGANISM(S): Mus musculus

SUBMITTER: Eugene Oltz

PROVIDER: E-GEOD-42851 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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