Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Allele-specific expression in A. thaliana hybrids grown under control and drought stress conditions


ABSTRACT: We estimate Allele-specific expression in F1 hybrids between Col-0 and Cvi-0 accessions grown under well watered and drought stress conditions. We found that ~90% of the genes showed similar ASE under both stresses. Trans-effects were less robust across environments, however its effect was milder compared to cis-variation. Assessment of ASE in different environments

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Francisco Cubillos 

PROVIDER: E-GEOD-43560 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Extensive cis-regulatory variation robust to environmental perturbation in Arabidopsis.

Cubillos Francisco A FA   Stegle Oliver O   Grondin Cécile C   Canut Matthieu M   Tisné Sébastien S   Gy Isabelle I   Loudet Olivier O  

The Plant cell 20141126 11


cis- and trans-acting factors affect gene expression and responses to environmental conditions. However, for most plant systems, we lack a comprehensive map of these factors and their interaction with environmental variation. Here, we examined allele-specific expression (ASE) in an F1 hybrid to study how alleles from two Arabidopsis thaliana accessions affect gene expression. To investigate the effect of the environment, we used drought stress and developed a variance component model to estimate  ...[more]

Similar Datasets

2015-06-25 | GSE43560 | GEO
2012-01-12 | E-GEOD-33713 | biostudies-arrayexpress
2010-05-12 | E-MTAB-107 | biostudies-arrayexpress
2014-07-08 | E-GEOD-52806 | biostudies-arrayexpress
2011-05-17 | E-GEOD-24836 | biostudies-arrayexpress
2014-03-14 | E-GEOD-52236 | biostudies-arrayexpress
2011-05-17 | E-GEOD-24835 | biostudies-arrayexpress
2015-01-01 | E-GEOD-54680 | biostudies-arrayexpress
2011-05-17 | E-GEOD-25054 | biostudies-arrayexpress
2011-05-17 | E-GEOD-25051 | biostudies-arrayexpress