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Transcriptomic analysis of prometastatic and metastasis-resistant lungs from mice

ABSTRACT: We describe the gene expression profile of metastasis-prone lungs of mice after injection of LN4-tumor cell conditioned media intraperitoneally for one week, compared to the metastasis-inhibitory PC3 tumor cell conditioned media, which is the parental cell line to LN4 2 mice injected with RPMI medium (control), 2 mice injected with PC3-derived conditioned medium, and 2 mice injected with PC3M-LN4 conditioned medium

ORGANISM(S): Mus musculus

SUBMITTER: Dingcheng Gao

PROVIDER: E-GEOD-44459 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transcriptomic analysis of prometastatic and metastasis-resistant lungs from mice

Project description:We describe the gene expression profile of metastasis-prone lungs of mice after injection of LN4-tumor cell conditioned media intraperitoneally for one week, compared to the metastasis-inhibitory PC3 tumor cell conditioned media, which is the parental cell line to LN4

2014-02-01 | GSE44459 | GEO

RAW264.7 cells: RANKL vs Bone Metastasis Tumor Cell Condidtioned Media

Project description:Transcriptional profiling of differential miRNA expression in mouse RAW264.7 preosteoclast cells comparing control untreated cells with RAW264.7 cells treated for 6 days. Treatment conditiones tested included 50ng/mL RANKL or indicated bone metastasis tumor cell conditioned media from 4T1, 4T1.2, TSU-PR1, and TSU-PR1-B2 cell lines. Two-condition experiment, Control cells vs. treated cells.

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Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cells

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2020-08-31 | PXD020426 | Pride

DNA methylation variations are required for reversible EMT induced by cancer-associated fibroblasts in PCa cells

Project description:Epithelial-to-mesenchymal transition (EMT) and cancer stem cells play relevant roles in metastasis and drug resistance in castration-resistant PCa. Conditioned-media from Cancer-Associated Fibroblasts from two patients with aggressive PCa induce EMT, reversible DNA methylation and transcriptional variations in androgen independent PC3, but not in androgen dependent LN-CaP cells. Focal CpG islands hyper-methylation associated to transcriptional repression of epithelial markers occurs together with widespread hypo-methylation, including promoters of EMT and stemness regulating genes resulting in their transcriptional activation. Remarkably, DNA methylation and transcription patterns are entirely reverted upon exposure to serum-free medium (mesenchymal-to-epithelial transition). DNMT3A is required for de novo methylation and silencing of CDH1 and GRHL2, the ZEB1 direct repressor, while its knock-down prevents EMT entry. These unprecedented results highlight that CAF-released factors induce reversible DNA methylation patterns required for transcriptional variations essential for EMT and stemness in androgen independent PCa cells, suggesting that similar plasticity might occur in tumour microenvironment.

2017-03-09 | E-MTAB-4752 | biostudies-arrayexpress

267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level

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2004-03-21 | GSE951 | GEO

DNA methylation variations are required for reversible EMT induced by cancer-associated fibroblasts in PCa cells

Project description:Epithelial-to-mesenchymal transition (EMT) and cancer stem cells play relevant roles in metastasis and drug resistance in castration-resistant prostate cancer (PCa). Conditioned-media from Cancer-Associated Fibroblasts from two patients with aggressive PCa induce EMT, reversible DNA methylation and transcriptional variations in androgen independent PC3, but not in androgen dependent LN-CaP cells. Focal CpG islands hyper-methylation associated to transcriptional repression of epithelial markers occurs together with widespread hypo-methylation, including promoters of EMT and stemness regulating genes resulting in their transcriptional activation. Remarkably, DNA methylation and transcription patterns are entirely reverted upon exposure to serum-free medium (mesenchymal-to-epithelial transition). DNMT3A is required for de novo methylation and silencing of CDH1 and GRHL2, the ZEB1 direct repressor, while its knock-down prevents EMT entry. These unprecedented results highlight that CAF-released factors induce reversible DNA methylation patterns required for transcriptional variations essential for EMT and stemness in androgen independent PCa cells, suggesting that similar plasticity might occur in tumour microenvironment. This submission contains data and metadata from the methylation profiling by array of PC-3 cells treated with conditioned media from Human prostate fibroblasts (HPFs) and cancer associated fibroblasts (CAFs).

2017-03-03 | E-MTAB-4753 | biostudies-arrayexpress

expression changes by establishing metastasis

Project description:Labeled PC3 were injected into male mice. 5-7 weeks later, cancer cells of metastasis site were extracted from bone marrow was compared with injected cell in vitro culture by microarray and pathway analysis.

2017-08-31 | GSE95324 | GEO

LC-MSMS of microplasts derived from macrophage conditioned medium treated breast adenocarcinoma MCF-7 cells. Pooja Kamal Melwani, M.Sc., Nishad S, PhD, Badri Narain Pandey, PhD, Radiation Signalling and Cancer Biology Section, Radiation Biology & Health Sciences Division, Bhabha Atomic Research Centre, Mumbai 400 085, India

Project description:Paracrine signals relayed between heterogenous cell types through small and large extracellular vesicles promote cancer cell growth, invasion and metastasis. Microplasts, also called as cytoplasts or cytokineplasts are large extracellular vesicles (0.5-11µm diameter) originating from migratory cells. Microplasts are known to be associated with invasive phenotypes of cancer cells and promote metastasis. Treatment with macrophage conditioned medium induces significant shedding of microplasts from MCF-7 breast adenocarcinoma cells. To characterise microplasts and to study their potential role in intercellular communication in cancer, we isolated microplasts derived from macrophage conditioned medium treated MCF-7 cells and investigated their protein cargo through LC-MSMS.

2021-05-05 | PXD024293 | Pride

267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level

2010-06-09 | E-GEOD-951 | biostudies-arrayexpress

Microarray Analysis of Genes Regulated by Macrophage-Conditioned Media Treatment of Human Pre-Adipocytes

Project description:A major development in the study of obesity is the recognition that the condition is characterised by chronic mild inflammation. Within adipose tissue, this involves the infiltration of macrophages, as well as the direct inflammatory response of the adipocytes and pre-adipocytes. This study has used Agilent whole-genome microarrays to examine the effects of macrophage-conditioned medium on the global inflammatory response of human pre-adipocytes. Human pre-adipocytes (SGBS cells) were treated with macrophage (U937 cells) conditioned medium for 24 h. Control pre-adipocytes were treated with unconditioned medium (control) or RPMI-1640 media alone to control for differences in media used to culture the U937 cells. There were 5 biological replicates per group.

2011-12-21 | E-GEOD-27503 | biostudies-arrayexpress

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