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Xenorhabdus nematophila FliZ regulon identification by RNA-Seq

ABSTRACT: A fliZ mutant in the entomopathogenic bacterium X. nematophila is attenuated in virulence in the insect. The goal of this study is to compare transcriptomes of the fliZ mutant and wild type strain to identify the FliZ regulon. Two biological replicates of total RNA from exponential cultures of WT strain and fliZ mutant were analysed by deep sequencing, using Illumina HiSeq 2000.

ORGANISM(S): Xenorhabdus nematophila

SUBMITTER: Sophie Gaudriault

PROVIDER: E-GEOD-47365 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Xenorhabdus nematophila FliZ regulon identification by RNA-Seq

Project description:A fliZ mutant in the entomopathogenic bacterium X. nematophila is attenuated in virulence in the insect. The goal of this study is to compare transcriptomes of the fliZ mutant and wild type strain to identify the FliZ regulon.

2013-05-27 | GSE47365 | GEO

Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure

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Project description:Xenorhabdus nematophila is a Gram-negative bacterium, mutually associated with the soil nematode Steinernema carpocapsae and this nematobacterial complex is parasitic for a broad spectrum of insects. The transcriptional regulator OxyR is widely conserved in bacteria, but the OxyR regulon can vary significantly between species. OxyR activates the transcription of a set of genes that influence cellular defense against oxidative stress. It is also involved in the virulence of several bacterial pathogens. The aim of this study was to identify the X. nematophila OxyR regulon and investigate its role in the bacterial life cycle. An oxyR-mutant was constructed in X. nematophila and phenotypically characterized in vitro and in vivo after reassociation with its nematode partner. OxyR plays a major role during the X. nematophila resistance to oxidative stress in vitro. Transcriptome analysis allowed the identification of 59 genes differentially regulated in the oxyR mutant compared to the parental strain. In vivo, the oxyR mutant was able to reassociate with the nematode as efficiently as the control strain. These nematobacterial complexes harboring the oxyR mutant symbiont were able to rapidly kill the insect larvae in less than 48h after infestation, suggesting that factors other than OxyR could also allow X. nematophila to cope with oxidative stress encountered during this phase of infection in insect. The significant increased number of offspring of the nematobacterial complex when reassociated with the X. nematophila oxyR mutant compared to the control strain, revealed a potential role of OxyR during this symbiotic stage of the bacterial life-cycle.

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RNA-seq analysis of Xenorhabdus nematophila

Project description:Analysis of size selected RNA samples to identify sRNAs using wild-type and rpoS mutant strains.

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Project description:Transcriptional profiling of C. elegans young adult worms exposed to pathogen Xenorhabdus nematophila for 4 hours versus age-matched worms exposed to control lab food E. coli OP50. The goal was to identify genes regulated in response to pathogen. The broader goal of study was to study evolution of pathogen response by comparing this expression profile to that obtained by exposing the nematode Pristionchus pacificus to the same pathogen. Other experiments which are a part of this study include expression profiling of C. elegans and P. pacificus on other pathogens including Bacillus thuringiensis, Staphylococcus aureus, and Serratia marcescens. One-condition experiments. C. elegans young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours. 4 biological replicates for each condition, including 2 dye-swaps.

2012-03-21 | E-GEOD-36501 | biostudies-arrayexpress

P. pacificus young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours

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2012-03-21 | E-GEOD-36523 | biostudies-arrayexpress

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