Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Genome-wide analysis of Staufen1-bound mRNAs in prometaphase

ABSTRACT: The goal of this experiment was to identify Staufen1-bound mRNAs in prometaphase cells. Stau1 abundance fluctuates through the cell cycle: it is high in the G2 phase of the cell cycle and rapidly decreases as cells transit through mitosis. The importance of controlling Stau1 levels was underscored by the observation that its overexpression impairs mitosis as well as proliferation of transformed cell lines. As a major post-transcriptional regulator, Stau1 may exert its role(s) through the spatial and/or temporal regulation of its bound mRNAs. Therefore, to gather clues to support this possibility, we identified Stau1-bound mRNAs in prometaphase as a means to identify mRNAs that could be subjected to post-transcriptional modulation when Stau1 is partly degraded in mitosis. HEK293T cells were transfected with plasmids coding for Stau155-FLAG or the empty vector as control. Cells were synchronized in prometaphase with nocodazole. Stau1-bound mRNAs were isolated after immunoprecipitation using anti-FLAG antibody.

ORGANISM(S): Homo sapiens

SUBMITTER: Luc DesGroseillers 

PROVIDER: E-GEOD-51183 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

Cell cycle-dependent regulation of the RNA-binding protein Staufen1.

Boulay Karine K   Ghram Mehdi M   Viranaicken Wildriss W   Trépanier Véronique V   Mollet Stéphanie S   Fréchina Céline C   DesGroseillers Luc L  

Nucleic acids research 20140606 12

Staufen1 (Stau1) is a ribonucleic acid (RNA)-binding protein involved in the post-transcriptional regulation of gene expression. Recent studies indicate that Stau1-bound messenger RNAs (mRNAs) mainly code for proteins involved in transcription and cell cycle control. Consistently, we report here that Stau1 abundance fluctuates through the cell cycle in HCT116 and U2OS cells: it is high from the S phase to the onset of mitosis and rapidly decreases as cells transit through mitosis. Stau1 down-reg  ...[more]

Similar Datasets

Transcriptomics Genome-wide analysis of Staufen1-bound mRNAs in prometaphase
2014-07-03 | GSE51183 | GEO
Transcriptomics Transcriptome-wide mapping of human Staufen1 binding sites
2013-11-25 | E-GEOD-52447 | biostudies-arrayexpress
Transcriptomics Genome-wide analysis of mRNAs expression in prometaphase
2014-07-03 | E-GEOD-51182 | biostudies-arrayexpress
Transcriptomics Genome-wide analysis of mRNAs expression in prometaphase
2014-07-03 | GSE51182 | GEO
Other IP Staufen1
2008-01-18 | GSE8438 | GEO
Transcriptomics Transcriptome-wide mapping of human Staufen1 binding sites
2013-11-25 | GSE52447 | GEO
Transcriptomics Chromatin immunoprecipitation of human HEK cells immunoprecipitated by Staufen1
2008-06-16 | E-GEOD-8438 | biostudies-arrayexpress
Transcriptomics Knockout of Staufen1 impairs the localization of specific subsets of mRNAs on the mitotic spindle of colorectal cancer cells
2019-10-05 | GSE138441 | GEO
Transcriptomics siRNA of human HeLa cells reveals Staufen1 regulates a variety of mammalian transcripts
2008-06-15 | E-GEOD-6679 | biostudies-arrayexpress
Transcriptomics Staufen1 regulates a variety of mammalian transcripts
2007-12-26 | GSE6679 | GEO