Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

81 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana:seedlings treated by cis-cinnamic acid derivatives versus control seedlings

ABSTRACT: Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid derivatives constructed by Nishikawa et al. (2013) Phytochemistry (http://dx.doi.org/10.1016/j.phytochem.2013.08.013), evaluating the candidate of herbicide chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, cis-CA analogue-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Naoya Wasano

PROVIDER: E-GEOD-51400 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Arabidopsis thaliana: cis-cinnamic acid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid. Two-condition experiment, cis-cinnamic acid-treated seedlings vs. control seedlings. Biological replicates: 2 control replicates, 2 cis-cinnamic acid treated.

2012-06-30 | E-GEOD-37862 | biostudies-arrayexpress

Arabidopsis thaliana:goniothalamin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with goniothalamin, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, goniothalamin-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 goniothalamin-treated.

2013-03-27 | E-GEOD-44749 | biostudies-arrayexpress

Arabidopsis thaliana:cyanamid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cyanamid, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings Two-condition experiment, cyanamid-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 cyanamid treated.

2013-03-01 | E-GEOD-44750 | biostudies-arrayexpress

Arabidopsis thaliana: auxin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with auxin (indole-3-acetic acid), highlighting to the physiological function of auxin by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, auxin-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 auxin-treated.

2012-05-09 | E-GEOD-37899 | biostudies-arrayexpress

Arabidopsis thaliana: trans-2-hexenal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with trans-2-hexenal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, trans-2-hexenal-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 trans-2-hexenal-treated.

2013-03-01 | E-GEOD-44751 | biostudies-arrayexpress

Arabidopsis thaliana: safranal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with safranal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, safranal-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 safranal-treated.

2016-01-13 | E-GEOD-76787 | biostudies-arrayexpress

Arabidopsis thaliana: cis-cinnamic acid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid.

2012-07-01 | GSE37862 | GEO

Arabidopsis thaliana:seedlings treated by cis-cinnamic acid derivatives versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid derivatives constructed by Nishikawa et al. (2013) Phytochemistry (http://dx.doi.org/10.1016/j.phytochem.2013.08.013), evaluating the candidate of herbicide chemicals by observing early response of gene expressions in Arabidopsis seedlings.

2013-12-28 | GSE51400 | GEO

Transcriptome analysis of Arabidopsis wild-type and NRT1.1-knockout mutant seedlings grown under 10 mM ammonium as sole nitrogen source

Project description:High levels of ammonium as the sole nitrogen source impairs plant growth, i.e. ammonium toxicity, the primary cause of which remains to be determined. To obtain a clue about the toxic mechanism, we compared genome-wide gene expression between the wild-type (Col) and NRT1.1-knockout mutant (chl1-5, nrt1.1) seedlings growing in media containing toxic levels of ammonium as the sole nitrogen source.

2023-10-31 | E-MTAB-13395 | biostudies-arrayexpress

CIS deficiency intensifies GM-CSF signaling to polarize alternative activated macrophages

Project description:GM-CSF paradoxically possesses ability to differentiate both classically activated macrophages (MØs) with dominant proinflammatory function (M1-like MØs) and alternative activated MØs with strong immunosuppressive function (M2-like MØs). The intrinsic regulatory mechanism responsible for functional polarization of MØs under GM-CSF signalling remains elusive. Here we revealed that cytokine-inducible SH2-containing protein (CIS), induced by GM-CSF, is a key determinant in controlling MØ polarization. Compared to WT MØs, Cish-/- MØs gained characteristics of alternative activated MØs (M2 MØs), showing high expression of prototypic M2 markers Arginase 1, Tgm2 and YM-1; strong suppression of T cell proliferation; and low production of IL-12 and other proinflammatory cytokines¬¬. Differing from canonical IL-4/STAT6/IRF4 signaling axis of M2 induction, development of M2 MØ characteristics in Cish-/- MØs was associated with intensified STAT5 activation and consequent IRF8 downregulation. Attenuation of GM-CSF signalling via JAK inhibition and IRF8 rescue corrected certain functional defects in Cish-/- MØs. As CIS inhibition in NK and T cells promotes anti-tumour immunity, we showed that CIS deficiency enhanced the development of intra-tumoural M2 MØs and reduced CTL induction within tumour microenvironment with elevated GM-CSF. Overall, we conclude that CIS acts as an intrinsic rheostat to control intense GM-CSF signalling in order to maintain proinflammatory functions of MØs. Targeting CIS as a checkpoint in cancer immunotherapy should consider its role in regulating myeloid cell function.

2023-01-21 | PXD018390 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data