Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana:goniothalamin-treated seedlings versus control seedlings

ABSTRACT: Transcriptional profiling of Arabidopsis thaliana seedlings treated with goniothalamin, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, goniothalamin-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 goniothalamin-treated.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Naoya Wasano

PROVIDER: E-GEOD-44749 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Arabidopsis thaliana:seedlings treated by cis-cinnamic acid derivatives versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid derivatives constructed by Nishikawa et al. (2013) Phytochemistry (http://dx.doi.org/10.1016/j.phytochem.2013.08.013), evaluating the candidate of herbicide chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, cis-CA analogue-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2.

2013-12-28 | E-GEOD-51400 | biostudies-arrayexpress

Arabidopsis thaliana:cyanamid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cyanamid, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings Two-condition experiment, cyanamid-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 cyanamid treated.

2013-03-01 | E-GEOD-44750 | biostudies-arrayexpress

Arabidopsis thaliana: auxin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with auxin (indole-3-acetic acid), highlighting to the physiological function of auxin by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, auxin-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 auxin-treated.

2012-05-09 | E-GEOD-37899 | biostudies-arrayexpress

Arabidopsis thaliana: cis-cinnamic acid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cis-cinnamic acid. Two-condition experiment, cis-cinnamic acid-treated seedlings vs. control seedlings. Biological replicates: 2 control replicates, 2 cis-cinnamic acid treated.

2012-06-30 | E-GEOD-37862 | biostudies-arrayexpress

Arabidopsis thaliana: trans-2-hexenal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with trans-2-hexenal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, trans-2-hexenal-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 trans-2-hexenal-treated.

2013-03-01 | E-GEOD-44751 | biostudies-arrayexpress

Arabidopsis thaliana: safranal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with safranal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings. Two-condition experiment, safranal-treated seedlings vs. control seedlings. Biological replicates:2 control replicates, 2 safranal-treated.

2016-01-13 | E-GEOD-76787 | biostudies-arrayexpress

Transcription profiling of Arabidopsis seedlings exposed to ANep1 Treatment

Project description:In order to study the Nep1 responsive genes in Arabidopsis, experiments were performed with the Affymetrix GeneChip Arabidopsis ATH1 Genome Array (Santa Clara, CA; Cat # 900385). Experiment Overall Design: Seven-day old Arabidopsis seedlings were exposed to Nep1 (10 ug/mL) treatment or using sterilized, deionized H2O as a control for 30 min. Two independent biological replications were conducted using two independent samples and two microarrays.

2008-06-13 | E-GEOD-4638 | biostudies-arrayexpress

Transcriptome analysis of Arabidopsis wild-type and NRT1.1-knockout mutant seedlings grown under 10 mM ammonium as sole nitrogen source

Project description:High levels of ammonium as the sole nitrogen source impairs plant growth, i.e. ammonium toxicity, the primary cause of which remains to be determined. To obtain a clue about the toxic mechanism, we compared genome-wide gene expression between the wild-type (Col) and NRT1.1-knockout mutant (chl1-5, nrt1.1) seedlings growing in media containing toxic levels of ammonium as the sole nitrogen source.

2023-10-31 | E-MTAB-13395 | biostudies-arrayexpress

Transcription profiling of Arabidopsis wild type and vin3.4 mutant seedlings exposed to low oxygen conditions

Project description:The effect of a 24 hour hypoxia (0.1% O2) treatment on wild-type (Col:FRI) seedlings and vin3.4 mutant seedlings, compared to control conditions.<br>Compare wild-type control to vin3.4 control<br>Compare wild-type control to wild-type 0.1% O2<br>Compare vin3.4 control to vin3.4 0.1% O2<br>Compare wild-type 0.1% O2 to vin3.4 0.1% O2

2009-06-01 | E-MEXP-2073 | biostudies-arrayexpress

Microarray-based Analysis of Gene Expression in Lycopersicon esculentum Roots in Response to Cadmium, Chromium, Mercury and Lead

Project description:We hypothesize that microarray-based analysis of Lycopersicon esculentum is a sensitive tool for the early detection of potential toxicity of heavy metals, as well as an effective tool for identifying the heavy metal-specific genes. To test the hypothesis, the Agilent whole-genome cDNA microarrays were used to assess the effects of heavy metal on L. esculentum at relatively low concentrations (1/10 LC50 of heavy metals). Results showed that the characteristic gene expression profiles induced by Cd, Cr, Hg and Pb were not only distinct from the control but also distinct from one another, demonstrating the feasibility of discriminating between the effects of these four heavy metals present at relatively low concentrations. Moreover, heavy metal-specific genes were identified by microarray analysis. These findings support the above hypothesis. A total of fifteen microarrays (4*44K tomato gene expression microarray; G2519F-022270) were used to hybridize with RNA extracted from Cd-, Cr-, Hg-, Pb-treated and the untreated roots (control) of Lycopersicon esculentum. Each treatment was carried out for three replicates. A total of thirty seedlings were used for each treatment. Root samples from ten seedlings randomly selected from each Petri dish were pooled together to obtain three biological replicates.

2014-11-06 | E-GEOD-63024 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data