Unknown,Transcriptomics,Genomics,Proteomics

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CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy [ChIP-seq]


ABSTRACT: H3-ChIP-seq was performed in order to analyze changes in nucleosomal occupancy after depletion of CTCF/P190 and ISWI from Drosophila S2 cells Histone H3 ChIP-seq from Drosophila S2 cells after CTCF/CP190 or ISWI-specific RNAi treatment

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Marek Bartkuhn 

PROVIDER: E-GEOD-51598 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

A functional insulator screen identifies NURF and dREAM components to be required for enhancer-blocking.

Bohla Dorte D   Herold Martin M   Panzer Imke I   Buxa Melanie K MK   Ali Tamer T   Demmers Jeroen J   Krüger Marcus M   Scharfe Maren M   Jarek Michael M   Bartkuhn Marek M   Renkawitz Rainer R  

PloS one 20140923 9


Chromatin insulators of higher eukaryotes functionally divide the genome into active and inactive domains. Furthermore, insulators regulate enhancer/promoter communication, which is evident from the Drosophila bithorax locus in which a multitude of regulatory elements control segment specific gene activity. Centrosomal protein 190 (CP190) is targeted to insulators by CTCF or other insulator DNA-binding factors. Chromatin analyses revealed that insulators are characterized by open and nucleosome  ...[more]

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