Unknown,Transcriptomics,Genomics,Proteomics

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Regulation of Ptch1 expression in the limb


ABSTRACT: Ptch1 is a critical negative feedback regulator of the Hedgehog signaling and is upregulated in response to pathway activation. How tissue specific responses are mediated remains unknown. Here, we performed ChIP-seq analysis for epitope-tagged endogenous Gli3 protein to identify limb-specific binding regions within the 500 kb region surrounding Ptch1. ChIP was carried out using an endogenously FLAG-tagged Gli3 protein.

ORGANISM(S): Mus musculus

SUBMITTER: Kevin Peterson 

PROVIDER: E-GEOD-52939 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications


The large spectrum of limb morphologies reflects the wide evolutionary diversification of the basic pentadactyl pattern in tetrapods. In even-toed ungulates (artiodactyls, including cattle), limbs are adapted for running as a consequence of progressive reduction of their distal skeleton to symmetrical and elongated middle digits with hoofed phalanges. Here we analyse bovine embryos to establish that polarized gene expression is progressively lost during limb development in comparison to the mous  ...[more]

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