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Transcriptome profiling of various organs at different developmental stages in rice (single-end)

ABSTRACT: To identificate long noncoding RNAs in rice, we profiled transcriptome of various organs at different developmental stages using stranded single-end RNA-seq based on poly(A) selection. Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds.

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Huan Wang

PROVIDER: E-GEOD-56463 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits.

Wang Huan H Niu Qi-Wen QW Wu Hui-Wen HW Liu Jun J Ye Jian J Yu Niu N Chua Nam-Hai NH

The Plant journal : for cell and molecular biology 20151001 2

Long non-coding RNAs (lncRNAs) have recently been found to widely exist in eukaryotes and play important roles in key biological processes. To extend our knowledge of lncRNAs in crop plants we performed both non-directional and strand-specific RNA-sequencing experiments to profile non-coding transcriptomes of various rice and maize organs at different developmental stages. Analysis of more than 3 billion reads identified 22 334 long intergenic non-coding RNAs (lincRNAs) and 6673 pairs of sense a ...[more]

PMID: 26387578

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