Unknown,Transcriptomics,Genomics,Proteomics

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HMeDIP-seq profiling of DNA hydroxymethylation in primary adipocytes from epididymal white adipose tissue (eWAT) of adult C57BL/6J mice


ABSTRACT: DNA hydroxymethylation plays a crucial role in the regulation of gene transcription. In this study, using hMeDIP-seq experiment, we report the mapping of DNA hydroxymethylation in adipocytes from mouse eWAT Examination of DNA hydroxymethylation pattern in adipocytes from mouse eWAT

ORGANISM(S): Mus musculus

SUBMITTER: JM-CM-)rM-CM-4me Eeckhoute 

PROVIDER: E-GEOD-57582 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation.

Dubois-Chevalier Julie J   Oger Frédérik F   Dehondt Hélène H   Firmin François F FF   Gheeraert Céline C   Staels Bart B   Lefebvre Philippe P   Eeckhoute Jérôme J  

Nucleic acids research 20140902 17


CCCTC-binding factor (CTCF) is a ubiquitously expressed multifunctional transcription factor characterized by chromatin binding patterns often described as largely invariant. In this context, how CTCF chromatin recruitment and functionalities are used to promote cell type-specific gene expression remains poorly defined. Here, we show that, in addition to constitutively bound CTCF binding sites (CTS), the CTCF cistrome comprises a large proportion of sites showing highly dynamic binding patterns  ...[more]

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