Ontology highlight
ABSTRACT:
ORGANISM(S): Mus musculus
SUBMITTER: Lucia Peixoto
PROVIDER: E-GEOD-63412 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Peixoto Lucia L Risso Davide D Poplawski Shane G SG Wimmer Mathieu E ME Speed Terence P TP Wood Marcelo A MA Abel Ted T
Nucleic acids research 20150721 16
The sequencing of the full transcriptome (RNA-seq) has become the preferred choice for the measurement of genome-wide gene expression. Despite its widespread use, challenges remain in RNA-seq data analysis. One often-overlooked aspect is normalization. Despite the fact that a variety of factors or 'batch effects' can contribute unwanted variation to the data, commonly used RNA-seq normalization methods only correct for sequencing depth. The study of gene expression is particularly problematic wh ...[more]