Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study


ABSTRACT: The aim of this study was to identify the specific molecular biological features predicting the therapeutic outcomes of three bDMARDs, infliximab (IFX), tocilizumab (TCZ), and abatacept (ABT) by studying blood gene expression signature of patients prior to biologic treatment in a unified test platform. GSEA analyses showed that inflammasome genes were significantly upregulated in IFX’s NON-REM compared with its REM. In TCZ’s REM, B cell-specifically expressed genes were upregulated. RNA elongation, apoptosis-related, and NK cell-specifically expressed genes were upregulated in ABT’s NON-REM. RA patients who responded inadequately to methotrexate and were later commenced with any one of IFX (n=140), TCZ (n=38), and ABT (n=31) as their first biologic between May 2007 and November 2011 were enrolled. Whole blood gene expression data were obtained prior to their biologic administration. They were defined as remission and non-remission groups, according to CDAI at 6 months of biologic therapy.

ORGANISM(S): Homo sapiens

SUBMITTER: Seiji Nakamura 

PROVIDER: E-GEOD-78068 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study.

Nakamura Seiji S   Suzuki Katsuya K   Iijima Hiroshi H   Hata Yuko Y   Lim Chun Ren CR   Ishizawa Yohei Y   Kameda Hideto H   Amano Koichi K   Matsubara Kenichi K   Matoba Ryo R   Takeuchi Tsutomu T  

Arthritis research & therapy 20160719


<h4>Background</h4>According to EULAR recommendations, biologic DMARDs (bDMARDs) such as tumor necrosis factor inhibitor, tocilizumab (TCZ), and abatacept (ABT) are in parallel when prescribing to rheumatoid arthritis (RA) patients who have shown insufficient response to conventional synthetic DMARDs. However, most prediction studies of therapeutic response to bDMARDs using gene expression profiles were focused on a single bDMARD, and consideration of the results from the perspective of RA patho  ...[more]

Similar Datasets

2016-07-21 | GSE78068 | GEO
2010-08-05 | E-GEOD-23393 | biostudies-arrayexpress
2016-10-25 | E-GEOD-77528 | biostudies-arrayexpress
2014-04-30 | E-GEOD-48498 | biostudies-arrayexpress
2013-03-07 | E-GEOD-36418 | biostudies-arrayexpress
2013-10-04 | E-GEOD-33943 | biostudies-arrayexpress
2013-04-03 | E-GEOD-43860 | biostudies-arrayexpress
2020-05-28 | E-MTAB-9200 | biostudies-arrayexpress
2023-10-07 | GSE215067 | GEO
2011-12-31 | E-GEOD-27045 | biostudies-arrayexpress