Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

40 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of Solanum tuberosum for tuber quality traits - Flesh color and Cooking type

ABSTRACT: BSA expression profiling for tuber flesh color. Extreme individuals segregating for tuber flesh color are selected and RNA is pooled together. Gene expression is profiled using microarray technology. Genes displaying differential expression between the constrasting bulks are considered as candidate genes responsible for the targeted trait and further analyzed using the individual genotypes.

ORGANISM(S): Solanum tuberosum

SUBMITTER: Bjorn Kloosterman

PROVIDER: E-MEXP-2443 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of potato tubers for the investigation of methionine content

Project description:BSA pooling experiment for methionine content in a segrating diploid potato population (CxE). RNA of constrasting individuals for methionine content are pooled together based on their tuber methionine content and marker association with either or both of the identified QTLs for methionine content

2009-11-20 | E-MEXP-2441 | biostudies-arrayexpress

Transcription profiling of Solanum tuberosum during tuber induction from a stolon tip to a tuber

Project description:The experiment followed transcriptional changes during potato tuber induction from a stolon tip to a tuber. Samples were taken at stage 1, stage 3, stage 4 and stage 5 according to Kloosterman et al., 2005

2010-02-08 | E-MEXP-2482 | biostudies-arrayexpress

Soybean Flooding

Project description:Transcriptional profiling of roots and hypocotyls of soybean comparing control untreated 2-d-old seedlings with flooding treated 2-d-old seedlings.

2011-09-02 | E-MEXP-2967 | biostudies-arrayexpress

metastatic signature is present in primary prostate tumor

Project description:Comparaison of relapse signature after radical prostatectomy versus metastasis signature

2011-11-16 | E-MEXP-3005 | biostudies-arrayexpress

Transcription profiling of human entorhinal cortex cells from suicide patients with major depression.

Project description:RNAs were extracted from entorhinal cortex of human suicide patients with major depression and matched control subjects. The transcription profile was investigated by Agilent microarray platform and quantitative real-time PCR to reveal alterations in neuronal functions in this brain region.

2010-12-31 | E-MEXP-2607 | biostudies-arrayexpress

Transcription profiling by array of mouse hippocampus and prefrontal cortex from mouse model of anxiety

Project description:Total RNAs were extracted from the hippocampus and prefrontal cortex of anxious mice. The transcriptome of the two brain regions were investigated using a custom made Agilent 8 x 15k features oligo microarray.

2010-12-31 | E-MEXP-2603 | biostudies-arrayexpress

ATLL clonality

Project description:Comparison of the genomic aberrations between periperal blood and lymph node samples with Adult T cell Leukemia/Lymphoma

2011-04-15 | E-MEXP-3042 | biostudies-arrayexpress

Identification of FOXO3 and PRDM1 as tumor suppressor gene candidates in NK cell neoplasms by the combination of genomic and functional analyses -CGH

Project description:Array-CGH analysis of NK cell neoplasm (clinical samples + cell lines)

2011-06-11 | E-MEXP-3002 | biostudies-arrayexpress

NUP98RARG gene fusion

Project description:A novel NUP98/RARG gene fusion in acute myeloid leukemia resembling acute promyelocytic leukemia

2010-10-18 | E-MEXP-2928 | biostudies-arrayexpress

ChIP-chip by array of human T-acute lymphoblastic leukaemia cells using AcH3 antibodies

Project description:T-ALL Xenograft Histone Modification at ERG locus: The cells used are human T-acute lymphoblastic leukaemia cells that have been propagated in NOD/SCID mice. T-ALL8,T-ALL16, T-ALL27, T-ALL29, T-ALL30 and T-ALL31 are cells from six different patients. Normalized data files containing chromosome 21 data are available on the FTP site for this experiment in the E-MTAB-431.additional.zip archive.

2012-01-01 | E-MTAB-431 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data