Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

72 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of Pseudomonas putida KT2440 and mutant PP4959 in the stationary phase of growth in LB

ABSTRACT: Effect of the inactivation of locus PP4959 upon gene expression of Pseudomonas putida KT2440 in the stationary phase of growth in rich medium LB. This locus encodes the unique dual GGDEF/EAL domains response regulator in KT2440. To identify those genes with altered expression, cells were cultivated in LB at 24 M-:C to reach a turbidity at 660 nm of 3.3.

ORGANISM(S): Pseudomonas putida

SUBMITTER: Maria Isabel Ramos-Gonzalez

PROVIDER: E-MEXP-2486 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

KT2440 vs KT2440_NAH7

Project description:Plasmid-free Pseudomonas putida KT2440 compared with the same strain harbouring NAH7 plasmid; all the cells were grown in minimal medium M9 with glucose

2012-07-27 | E-MEXP-3412 | biostudies-arrayexpress

KT2440 vs. KT2440 _NAH7 Naphthalene

Project description:Plasmid-free Pseudomonas putida KT2440 compared with the same strain harbouring NAH7 plasmid; all the cells were grown in minimal medium (M9 with glucose) saturated with naphthalene.

2012-07-27 | E-MEXP-3411 | biostudies-arrayexpress

Transcription profiling of Pseudomonas putida KT2440 and mutant PP4959 in the rhizosphere

Project description:Effect of the inactivation of locus PP4959 upon gene expression of P. putida KT2440 in the rhizosphere of corn (Zea mays var. Girona). This locus encodes the unique dual GGDEF/EAL domains response regulator in KT2440. To identify those genes with altered expression, cells were recovered from the rhizosphere six days after inoculation of gnotobiotic seedlings.

2010-06-01 | E-MEXP-2478 | biostudies-arrayexpress

KT2440 wt vs. Mut agmR chloramphenicol

Project description:Transcriptional profile comparison of P. putida KT2440 and its isogenic mutant in agmR gene, both grown in minimal medium with added chloramphenicol (25 mg/mL)

2011-12-01 | E-MEXP-3206 | biostudies-arrayexpress

KT2440_Rhizosphere_Adaptation

Project description:A genome-wide analysis of gene expression of the root-colonizing bacterium Pseudomonas putida KT2440 in the rhizosphere of corn (Zea mays var. Girona). To identify reliable rhizosphere differentially expressed genes by this bacterium, populations of P. putida KT2440 previously exposed to a rhizospheric life style for seven days in the rhizosphere of corn were compared with populations previously exposed to a rhizospheric life style for a long period of 138 days.

2014-01-01 | E-MEXP-3804 | biostudies-arrayexpress

Transcription profiling by array of Pseudomonas putida KT2440 grown with or without chloramphenicol

Project description:Transcriptional profile of Pseudomonas putida KT2440 grown in the presence of chloramphenicol (25 mg/L) compared with the same cells grown in absence of chloramphenicol.

2010-11-01 | E-MEXP-2831 | biostudies-arrayexpress

KT2440 wt vs. mut agmR -M9 plus glucose chloramphenicol-free medium

Project description:DNA microarrays were carried out to compare the transcriptional profiles of P. putida KT2440 and its isogenic knock-out mutant in agmR gene (mut agmR) when grown in M9 medium with glucose as a sole carbon source and in absense of chloramphenicol or any other stressor compound.

2011-12-01 | E-MEXP-3203 | biostudies-arrayexpress

Transcription profiling by array of Pseudomonas putida KT2440 during exponential phase growing in minimal medium with or without naphthalene

Project description:Transcriptional profile of Pseudomonas putida KT2440 during exponential phase growing in minimal medium saturated with naphthalene compared with the same strain in naphthalene-free medium.

2010-11-01 | E-MEXP-2823 | biostudies-arrayexpress

T1E-18 vs T1E-18 Indole

Project description:Transcriptional profile of Pseudomonas putida DOT-T1E-18 strain grown in the presence of indole (300 uM) compared with the same cells grown in absence of indole.

2013-03-15 | E-MEXP-3822 | biostudies-arrayexpress

T1E vs T1E Ampicillin

Project description:Transcriptional profile of Pseudomonas putida DOT-T1E grown in the presence of ampicillin (300 ug/ml) compared with the same cells grown in absence of ampicillin

2013-03-15 | E-MEXP-3823 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data