Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

49 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Searching targets for miR-32 and miR-148a

ABSTRACT: Expression profiling of miR-32 or miR-148a transfected LNCaP cells.

ORGANISM(S): Homo sapiens

SUBMITTER: Sanni Jalava

PROVIDER: E-MEXP-2943 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling by array of mouse Srd5a3 mutant embryos

Project description:Transcriptional profiling of e8.5 mouse embryos comparing wt with Srd5a3Gt(betaGeo)703Lex/Gt(betaGeo)703Lex. Goal was to determine the developmental pathway disrupted in the mutant.<br>

2010-07-01 | E-MEXP-2713 | biostudies-arrayexpress

Transcription profiling by array of human embryonic stem cell line H9 in response to ionizing radiation.

Project description:The study aimed to elucidate the whole human genome wide changes in gene expression in cultured human embryonic stem cells after ionizing radiation exposures

2010-12-01 | E-MEXP-2596 | biostudies-arrayexpress

Transcription profiling of human entorhinal cortex cells from suicide patients with major depression.

Project description:RNAs were extracted from entorhinal cortex of human suicide patients with major depression and matched control subjects. The transcription profile was investigated by Agilent microarray platform and quantitative real-time PCR to reveal alterations in neuronal functions in this brain region.

2010-12-31 | E-MEXP-2607 | biostudies-arrayexpress

Transcription profiling by array of mouse hippocampus and prefrontal cortex from mouse model of anxiety

Project description:Total RNAs were extracted from the hippocampus and prefrontal cortex of anxious mice. The transcriptome of the two brain regions were investigated using a custom made Agilent 8 x 15k features oligo microarray.

2010-12-31 | E-MEXP-2603 | biostudies-arrayexpress

metastatic signature is present in primary prostate tumor

Project description:Comparaison of relapse signature after radical prostatectomy versus metastasis signature

2011-11-16 | E-MEXP-3005 | biostudies-arrayexpress

Transcription profiling of human monocytes incubated with or without dexamethasone and with Hb-Hp for different time

Project description:Human Monocytes were incubated with or without dexamethasone for 36h. Then non-primed or dexamethasone-primed monocytes were incubated with 500ug/ml Hb-Hp for 0h, 8h and 18h. RNA of all samples was analyzed with Agilent whole genome 4x44k microarrays (dual-color). For factorial analysis all samples were individually analyzed using the same reference sample (no pre-treatment, 0h).

2010-07-31 | E-MEXP-2598 | biostudies-arrayexpress

Transcription profiling of Solanum tuberosum for tuber quality traits - Flesh color and Cooking type

Project description:BSA expression profiling for tuber flesh color. Extreme individuals segregating for tuber flesh color are selected and RNA is pooled together. Gene expression is profiled using microarray technology. Genes displaying differential expression between the constrasting bulks are considered as candidate genes responsible for the targeted trait and further analyzed using the individual genotypes.

2009-11-16 | E-MEXP-2443 | biostudies-arrayexpress

Transcription profiling of potato tubers for the investigation of methionine content

Project description:BSA pooling experiment for methionine content in a segrating diploid potato population (CxE). RNA of constrasting individuals for methionine content are pooled together based on their tuber methionine content and marker association with either or both of the identified QTLs for methionine content

2009-11-20 | E-MEXP-2441 | biostudies-arrayexpress

Transcriptional profiling of human genetically modified and wild type lung cancer cells H1299 Xenografts from mouse.

Project description:Human H1299 lung cancer cells or clones engineered for tetracycline-inducible expression of wild type IRP2, or the deletion mutant IRP2?73 (lacking a specific insert of 73 amino acids), were injected subcutaneously into nude mice. The induction of IRP2 profoundly stimulated the growth of tumor xenografts, and this response was blunted by addition of tetracycline in the drinking water of the animals, to turnoff the IRP2 transgene. Interestingly, IRP2?73 failed to promote tumor growth above control levels. As expected, xenografts expressing the IRP2 transgene exhibited high levels of transferrin receptor 1 (TfR1); however, the expression of other known IRP targets was not affected. Moreover, these xenografts manifested increased c-MYC levels and ERK1/2 phosphorylation. A microarray analysis identified distinct gene expression patterns between control and tumors containing IRP2 or IRP1 transgenes. By contrast, gene expression profiles of control and IRP2?73-related tumors were more similar, consistently with their growth phenotype. Collectively, these data demonstrate an apparent pro-oncogenic activity of IRP2 that depends on its specific 73 amino acids insert, and provide further evidence for a link between IRPs and cancer biology.

2010-04-01 | E-MEXP-2524 | biostudies-arrayexpress

Transcription profiling of Methanococcoides burtonii grown at 4 and 23 degrees centigrade to study cold adaptation

Project description:Methanococcoides burtonii is member of the Archaea that is a valuable model for studying cold adaptation. We developed a Agilent microarray for determing which genes are expressed in operons, and which are differentially expressed at low (4°C) or high (23°C) temperature. Agilent 8 x 15K custom gene expression microarrays containing 15128 probes were designed based on the M. burtonii genome sequence. The Microarrays were constructed using 60-mer oligonucleotides covering 2236 genes (86.7% of the total number) on the coding strand (10153 oligonucleotides) and the complementary strand (3671 oligonucleotides), and a large number of intergenic regions (707 oligonucleotides) (Table 1). Each gene and intergenic region was covered by 1 to 6 oligonucleotides (average of 4 per gene). Eight independent replicates were performed using competitive hybridization comparing 8 cultures grown at 4°C vs 8 grown at 23°C. Due to the fact that different ORFs have different numbers of oligonucleotides (ranging from one to six) and that experiments were performed in 8 different replicates, each gene (or intergenic region) has 8 48 measures of fluorescence.

2011-02-01 | E-MEXP-2579 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data