Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Human Immunodeficiency Virus Tat Directly Interacts with a Specific Set of Cellular RNAs


ABSTRACT: We have used RNA immunoprecipitation to identify the set of mRNAs that HIV-1 Tat interacts with in T-cells. We have also performed measurements of relative RNA abundance to determine if Tat binding is associated with an increase in RNA abundance in Tat-expressing T-cells and during HIV infection of primary T-cells. We have also used RNA IP and ChIP-Chip to compare the RNAs with which Tat interacts with to the RNAs that RISC interacts with and the genes associated with pTEF-b.

ORGANISM(S): Homo sapiens

SUBMITTER: Richard Jenner 

PROVIDER: E-MEXP-3199 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Human immunodeficiency virus Tat associates with a specific set of cellular RNAs.

Bouwman Russell D RD   Palser Anne A   Parry Chris M CM   Coulter Eve E   Rasaiyaah Jane J   Kellam Paul P   Jenner Richard G RG  

Retrovirology 20140703


<h4>Background</h4>Human Immunodeficiency Virus 1 (HIV-1) exhibits a wide range of interactions with the host cell but whether viral proteins interact with cellular RNA is not clear. A candidate interacting factor is the trans-activator of transcription (Tat) protein. Tat is required for expression of virus genes but activates transcription through an unusual mechanism; binding to an RNA stem-loop, the transactivation response element (TAR), with the host elongation factor P-TEFb. HIV-1 Tat has  ...[more]

Similar Datasets

2014-12-15 | E-GEOD-37183 | biostudies-arrayexpress
2011-11-06 | E-GEOD-30738 | biostudies-arrayexpress
2015-06-15 | E-GEOD-65688 | biostudies-arrayexpress
2011-11-06 | E-GEOD-30739 | biostudies-arrayexpress
2013-08-02 | E-GEOD-44460 | biostudies-arrayexpress
2011-11-06 | E-GEOD-30734 | biostudies-arrayexpress
2015-12-31 | E-GEOD-33705 | biostudies-arrayexpress
2011-11-06 | E-GEOD-30736 | biostudies-arrayexpress
2015-12-31 | E-GEOD-32626 | biostudies-arrayexpress
2015-06-15 | E-GEOD-65687 | biostudies-arrayexpress